FvH4_4g05492

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000224
Physical Location & Seq
Forward (+)
4762392 .. 4763449
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05492.t1

Sequence Viewer

Length: 732 bp
ATGTGTCTTCAACAACAAAATTTTAAGAGGCCTATTACGATCGCTATAACTGATGAGCTCAATGATATTGTAATGTTAGCAAATTTACAAAGGTCCACTACAGGTCGAGACAGAGAAGCGAGACGAAGGACCAGACAAGTGAATATCAAGAAGGTGCATTCCCGGTTGAACCATAAAATCTCTGTCACTTTGCTACAAGATACCGGAAGACCCACAGGTCCATATGCAACATTGTTTGTGAATGATATCAACTTAATAGTTAGGAAGCTTGCACCGTTGAATGTGGAAAAATGGGCTGACATTGAATCAACTGATGTGGCTAAGATGATTGAAAGAATAACTAGCAAGTTCGACATTAACATTTCTCTTCCTTGGGTCAAGAGATATGCAATCAAAATGTTTAGGGCGGCATTTTTAAAATTTCGTTACGGGCTAAAGAAGCATTTTGATAAATTCTCAACAGTTGAAGAAGCACTAGAAAACAAGCCTGAAGCGGTTAAAACTCAAGAAGAATGGGATTTCCTTTGTACTCGTTTTTCAAGTCAAGAGTTACAGATCAATTCCTTAAATGCTAGAAAGAAACTGCATTTGACACATCATAATGCTTGGTCGAAGTATTTTATGGCCTATGAAGGTAATGAGACTGCCACACTTGAAGGATTGAAGGAGCATGCCAAAAGATTGGAGGAACTGAATGGGGATGTCGAAAGATTTCTGAAATTCATAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

244

Amino Acids

28.45

Weight (kDa)

9.65

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 216
AciI CCGC 2 cut(s) 407, 494
AcsI RAATTY 5 cut(s) 19, 82, 419, 452, 719
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 1 cut(s) 529
AgsI TTSAA 9 cut(s) 11, 169, 280, 305, 332, 467, 540, 656, 664
AluBI AGCT 2 cut(s) 58, 268
AluI AGCT 2 cut(s) 58, 268
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 102, 115, 635
AoxI GGCC 2 cut(s) 29, 624
ApoI RAATTY 5 cut(s) 19, 82, 419, 452, 719
Asp700I GAANNNNTTC 1 cut(s) 711
AspS9I GGNCC 3 cut(s) 93, 129, 218
AsuC2I CCSGG 1 cut(s) 163
AvaII GGWCC 3 cut(s) 93, 129, 218
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 60
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 102, 115, 635
BfaI CTAG 3 cut(s) 342, 476, 573
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 3 cut(s) 93, 129, 218
BmgT120I GGNCC 3 cut(s) 93, 129, 218
BmrFI CCNGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 1 cut(s) 706
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 31, 626
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 2 cut(s) 163, 204
BsmAI GTCTC 3 cut(s) 102, 115, 635
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 2 cut(s) 31, 626
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 39, 555
BspACI CCGC 2 cut(s) 407, 494
BspANI GGCC 2 cut(s) 31, 626
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 2 cut(s) 39, 555
BssT1I CCWWGG 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 276, 463
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 270, 672
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 706
BstKTI GATC 2 cut(s) 42, 558
BstMAI GTCTC 3 cut(s) 102, 115, 635
BstMBI GATC 2 cut(s) 39, 555
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 682
BsuRI GGCC 2 cut(s) 31, 626
BtsCI GGATG 1 cut(s) 706
Cac8I GCNNGC 2 cut(s) 270, 672
Cfr13I GGNCC 3 cut(s) 93, 129, 218
Csp6I GTAC 1 cut(s) 528
CspCI CAANNNNNGTGG 2 cut(s) 297, 332
CviAII CATG 1 cut(s) 671
CviJI RGCY 8 cut(s) 31, 58, 268, 296, 320, 433, 487, 626
CviKI_1 RGCY 8 cut(s) 31, 58, 268, 296, 320, 433, 487, 626
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 1 cut(s) 321
DpnI GATC 2 cut(s) 41, 557
DpnII GATC 2 cut(s) 39, 555
DraI TTTAAA 1 cut(s) 417
DrdI GACNNNNNNGTC 1 cut(s) 216
DseDI GACNNNNNNGTC 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 371
Eco147I AGGCCT 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 60
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 3 cut(s) 93, 129, 218
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 58
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 674
FatI CATG 1 cut(s) 670
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 713
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 3 cut(s) 342, 476, 573
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 31, 626
HapII CCGG 2 cut(s) 163, 204
Hin1II CATG 1 cut(s) 674
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 305
HpaII CCGG 2 cut(s) 163, 204
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 717
Hpy188III TCNNGA 5 cut(s) 107, 148, 379, 506, 545
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 5 cut(s) 120, 145, 626, 650, 658
HpyCH4III ACNGT 2 cut(s) 276, 463
HpyCH4V TGCA 5 cut(s) 157, 227, 272, 389, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 1 cut(s) 674
Kzo9I GATC 2 cut(s) 39, 555
LmnI GCTCC 1 cut(s) 667
LpnPI CCDG 6 cut(s) 87, 145, 176, 201, 217, 501
MaeI CTAG 3 cut(s) 342, 476, 573
MaeIII GTNAC 3 cut(s) 184, 425, 549
MalI GATC 2 cut(s) 41, 557
MboI GATC 2 cut(s) 39, 555
MboII GAAGA 4 cut(s) 219, 359, 479, 521
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 6 cut(s) 19, 82, 419, 452, 559, 719
MnlI CCTC 2 cut(s) 21, 679
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 6 cut(s) 24, 254, 357, 416, 498, 566
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 2 cut(s) 163, 204
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 439
NciI CCSGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 223
NdeII GATC 2 cut(s) 39, 555
NlaIII CATG 1 cut(s) 674
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 674
PaeI GCATGC 1 cut(s) 674
PceI AGGCCT 1 cut(s) 31
PctI GAATGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 409
Ple19I CGATCG 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 60
PspPI GGNCC 3 cut(s) 93, 129, 218
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 6 cut(s) 24, 254, 357, 416, 498, 566
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 2 cut(s) 39, 555
Sau96I GGNCC 3 cut(s) 93, 129, 218
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 60
SetI ASST 7 cut(s) 60, 95, 106, 156, 220, 270, 637
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 3 cut(s) 93, 129, 218
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
SphI GCATGC 1 cut(s) 674
Sse9I AATT 6 cut(s) 19, 82, 419, 452, 559, 719
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 2 cut(s) 407, 494
SspMI CTAG 3 cut(s) 342, 476, 573
SstI GAGCTC 1 cut(s) 60
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 2 cut(s) 276, 463
TaqI TCGA 4 cut(s) 106, 351, 611, 705
TasI AATT 6 cut(s) 19, 82, 419, 452, 559, 719
TatI WGTACW 1 cut(s) 527
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 6 cut(s) 24, 254, 357, 416, 498, 566
Tru9I TTAA 6 cut(s) 24, 254, 357, 416, 498, 566
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 645, 712
VpaK11BI GGWCC 3 cut(s) 93, 129, 218
XapI RAATTY 5 cut(s) 19, 82, 419, 452, 719
XceI RCATGY 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 3 cut(s) 342, 476, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.