Rw1G016290

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000224
Physical Location & Seq
Forward (+)
36203748 .. 36207080
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016290.1

Sequence Viewer

Length: 543 bp
ATGTTTGCTAATGAAATTGGATTCACCATTCGGAACCATGCACCTCTAAATGTGAAAAAATGGAAGGAAGTAAAATCAGAAGATAGGACAAGTTTGATCAAAAGAATAACTACTAAGTACGACATTGACATGTCTCTACCTTGGGTTAAGAGATATGTGAATAAATCTTTTGGAACAGTGTTTGCAAACTTCCGTTATAAGCTGAAGAAGCATTTTGAGCAATTCTCAACAAAAGAGGAAGCATTAGAAAATAAACACAAAGATGTTAAAACTGAAGAAGAATGGGCTTTTCTGTGCACTTATTTTCTAATTGTTTCAGAGAAAAATTCTATTAATAGGTCACATTTGAAATATCACCATAAAGCAGGATCGAAGTCTTTTATGTCGCCTCAAGAACAGATTAAAACATTCTCATTGAAAAGATACATTTTACGAAGAAACAAAATTTCCTCGCTGAAAACATCCCAGCAGAATTTGACCACTCCCACAGAAGTAAATATTGGAAAGAATGACCATGGAAGGGCCTGTTTTGTTTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

180

Amino Acids

21.26

Weight (kDa)

9.84

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 3 cut(s) 325, 444, 472
AcuI CTGAAG 2 cut(s) 224, 294
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 520
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 349, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 295
AlwI GGATC 1 cut(s) 376
AoxI GGCC 1 cut(s) 522
ApaLI GTGCAC 1 cut(s) 295
ApoI RAATTY 3 cut(s) 325, 444, 472
AseI ATTAAT 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 16, 347
BaeGI GKGCMC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 299
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 522
BmiI GGNNCC 1 cut(s) 35
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpuEI CTTGAG 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 140, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 520
BseDI CCNNGG 2 cut(s) 140, 514
BseGI GGATG 1 cut(s) 461
BseLI CCNNNNNNNGG 1 cut(s) 520
BseSI GKGCMC 1 cut(s) 299
BseYI CCCAGC 1 cut(s) 465
BshFI GGCC 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 2 cut(s) 96, 368
Bsp19I CCATGG 1 cut(s) 514
BspANI GGCC 1 cut(s) 524
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 140, 514
BssMI GATC 2 cut(s) 96, 368
BssT1I CCWWGG 2 cut(s) 140, 514
Bst4CI ACNGT 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 1 cut(s) 461
BstKTI GATC 2 cut(s) 99, 371
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 96, 368
BstMWI GCNNNNNNNGC 2 cut(s) 208, 217
BstNSI RCATGY 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 1 cut(s) 461
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 522
Csp6I GTAC 1 cut(s) 118
CviAII CATG 3 cut(s) 38, 130, 515
CviJI RGCY 3 cut(s) 202, 287, 524
CviKI_1 RGCY 3 cut(s) 202, 287, 524
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 98, 370
DpnII GATC 2 cut(s) 96, 368
Eco130I CCWWGG 2 cut(s) 140, 514
Eco57I CTGAAG 2 cut(s) 224, 294
EcoO109I RGGNCCY 1 cut(s) 522
EcoT14I CCWWGG 2 cut(s) 140, 514
ErhI CCWWGG 2 cut(s) 140, 514
FaeI CATG 3 cut(s) 41, 133, 518
FaiI YATR 7 cut(s) 39, 131, 156, 198, 360, 383, 516
FatI CATG 3 cut(s) 37, 129, 514
FbaI TGATCA 1 cut(s) 96
FokI GGATG 1 cut(s) 448
GsaI CCCAGC 1 cut(s) 469
HaeIII GGCC 1 cut(s) 524
Hin1II CATG 3 cut(s) 41, 133, 518
HinfI GANTC 1 cut(s) 21
HphI GGTGA 2 cut(s) 16, 347
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 3 cut(s) 33, 79, 319
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 2 cut(s) 58, 513
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 41, 185, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 217
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 3 cut(s) 41, 133, 518
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 96, 368
LpnPI CCDG 3 cut(s) 351, 479, 538
MaeIII GTNAC 1 cut(s) 339
MalI GATC 2 cut(s) 98, 370
MboI GATC 2 cut(s) 96, 368
MboII GAAGA 5 cut(s) 92, 217, 287, 290, 447
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 6 cut(s) 15, 221, 309, 325, 444, 472
MnlI CCTC 4 cut(s) 54, 229, 399, 460
MseI TTAA 5 cut(s) 147, 267, 333, 402, 541
MslI CAYNNNNRTG 2 cut(s) 128, 261
MwoI GCNNNNNNNGC 2 cut(s) 208, 217
NcoI CCATGG 1 cut(s) 514
NdeII GATC 2 cut(s) 96, 368
NlaIII CATG 3 cut(s) 41, 133, 518
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 339
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PfeI GAWTC 1 cut(s) 21
PscI ACATGT 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 333
PsiI TTATAA 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 522
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 2 cut(s) 128, 261
SaqAI TTAA 5 cut(s) 147, 267, 333, 402, 541
Sau3AI GATC 2 cut(s) 96, 368
Sau96I GGNCC 1 cut(s) 522
SduI GDGCHC 1 cut(s) 299
SetI ASST 4 cut(s) 46, 142, 204, 341
SmiMI CAYNNNNRTG 2 cut(s) 128, 261
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
Sse9I AATT 6 cut(s) 15, 221, 309, 325, 444, 472
SspI AATATT 1 cut(s) 499
StyI CCWWGG 2 cut(s) 140, 514
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 371
TasI AATT 6 cut(s) 15, 221, 309, 325, 444, 472
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 5 cut(s) 147, 267, 333, 402, 541
Tru9I TTAA 5 cut(s) 147, 267, 333, 402, 541
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 339
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 183
VneI GTGCAC 1 cut(s) 295
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 3 cut(s) 325, 444, 472
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.