Rroxscaffold_7G00189270

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000224
Physical Location & Seq
Forward (+)
29000554 .. 29002840
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189270.1

Sequence Viewer

Length: 792 bp
ATGGATGATGATAGGCTGAATGATTTTATCTGCGATGATGTTGAAGAAAACGATACCGATGATGATGACAATGAAGAAATCATTTCAAGTGATGACAATATTAAAATTACATTGATTATAACAAGTGACTCAAAGAATGCACACGTTCAATGCCAAACAACTAACCAGCCATCAATAAATGCTACAAATGAAGGGTTGAATGATGCTAGGACATCAGTCGATATCCAAGGATTTACTACAGGTACTCATTGTGTTGCATTGTTAAGGTCCAGAAAAAAAGTGCGTAGAAAGACAAAAAGTTTAAATGCTGATAAGGTGCATGAGCAGCACGGTACTAAAATACCTGTGACTTTCAAGAAAGAAAATGGCAGACCCACAAGTCCATATGCAGAAATATTTGCTAATGAAATTGAATTCACCATTCAGAACCATGCACTTCTGAATGTGAAAAAATGGAAGGAAGAAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACTACTAAGTATGACATTGACATGTCTCTACCTTGGGTTAAGAGATATGTGAATAAATCTTTTGGAACAGTGTTTGCTAACTTCCGTTATAAGCTGAAGAAGCATTTTGAGCAATTCTCAACAAAAGAAGAAGCATTAGAAAATAAACACAAAGATGTACCACGCTCCTCCTCTTCTTGTCCACAAATCCTTACCAACTCCGGCTACGCAGAGAACATCTCACGAGTCATTGTCTCCATACCTTTCCATGACCCAAAAATCAACGTAACCGAGGCAGCAAGACTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

263

Amino Acids

30.09

Weight (kDa)

6.46

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 119, 591
AasI GACNNNNNNGTC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 3 cut(s) 244, 334, 660
AflIII ACRYGT 2 cut(s) 142, 522
AgsI TTSAA 6 cut(s) 44, 87, 149, 199, 355, 413
AluBI AGCT 1 cut(s) 595
AluI AGCT 1 cut(s) 595
Alw26I GTCTC 2 cut(s) 531, 739
ApeKI GCWGC 2 cut(s) 325, 776
ApoI RAATTY 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 409
AvaII GGWCC 1 cut(s) 267
BauI CACGAG 1 cut(s) 723
BbvI GCAGC 2 cut(s) 337, 788
BccI CCATC 1 cut(s) 178
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 531, 739
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 2 cut(s) 326, 777
BlsI GCNGC 2 cut(s) 327, 778
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmsI GCATC 1 cut(s) 193
BoxI GACNNNNGTC 1 cut(s) 215
BplI GAGNNNNNCTC 4 cut(s) 602, 634, 704, 736
BsaJI CCNNGG 3 cut(s) 226, 533, 771
BseDI CCNNGG 3 cut(s) 226, 533, 771
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 658, 661
BseXI GCAGC 2 cut(s) 337, 788
BsiSI CCGG 1 cut(s) 702
BsmAI GTCTC 2 cut(s) 531, 739
BsmI GAATGC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 489
BssECI CCNNGG 3 cut(s) 226, 533, 771
BssMI GATC 1 cut(s) 489
BssSI CACGAG 1 cut(s) 723
BssT1I CCWWGG 2 cut(s) 226, 533
Bst2BI CACGAG 1 cut(s) 723
Bst4CI ACNGT 2 cut(s) 332, 571
Bst6I CTCTTC 1 cut(s) 679
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 492
BstMAI GTCTC 2 cut(s) 531, 739
BstMBI GATC 1 cut(s) 489
BstMWI GCNNNNNNNGC 3 cut(s) 325, 601, 610
BstNSI RCATGY 1 cut(s) 526
BstPAI GACNNNNGTC 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 337, 788
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 576
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 3 cut(s) 243, 333, 659
CviAII CATG 4 cut(s) 320, 431, 523, 749
CviJI RGCY 4 cut(s) 16, 169, 595, 705
CviKI_1 RGCY 4 cut(s) 16, 169, 595, 705
CviQI GTAC 3 cut(s) 243, 333, 659
DdeI CTNAG 1 cut(s) 507
DpnI GATC 1 cut(s) 491
DpnII GATC 1 cut(s) 489
DraI TTTAAA 1 cut(s) 303
DrdI GACNNNNNNGTC 1 cut(s) 378
DseDI GACNNNNNNGTC 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
Eco130I CCWWGG 2 cut(s) 226, 533
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 413
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 226, 533
ErhI CCWWGG 2 cut(s) 226, 533
FaeI CATG 4 cut(s) 323, 434, 526, 752
FatI CATG 4 cut(s) 319, 430, 522, 748
FauNDI CATATG 1 cut(s) 385
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 2 cut(s) 326, 777
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 326, 777
FspBI CTAG 1 cut(s) 207
GluI GCNGC 2 cut(s) 326, 777
HapII CCGG 1 cut(s) 702
Hin1II CATG 4 cut(s) 323, 434, 526, 752
HinfI GANTC 2 cut(s) 128, 726
HpaII CCGG 1 cut(s) 702
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 2 cut(s) 426, 441
Hpy188III TCNNGA 3 cut(s) 270, 355, 723
Hpy8I GTNNAC 1 cut(s) 683
HpyAV CCTTC 2 cut(s) 185, 451
HpyCH4III ACNGT 2 cut(s) 332, 571
HpyCH4IV ACGT 2 cut(s) 144, 765
HpyCH4V TGCA 5 cut(s) 140, 257, 319, 389, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 601, 610
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 2 cut(s) 144, 765
Hsp92II CATG 4 cut(s) 323, 434, 526, 752
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 1 cut(s) 489
LmnI GCTCC 1 cut(s) 671
LpnPI CCDG 6 cut(s) 179, 225, 283, 357, 483, 715
Lsp1109I GCAGC 2 cut(s) 337, 788
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 144, 765
MaeIII GTNAC 3 cut(s) 125, 346, 766
MalI GATC 1 cut(s) 491
MboI GATC 1 cut(s) 489
MboII GAAGA 7 cut(s) 56, 86, 473, 485, 610, 641, 666
MluCI AATT 4 cut(s) 105, 408, 413, 614
MlyI GAGTC 2 cut(s) 122, 735
MnlI CCTC 3 cut(s) 679, 682, 766
MseI TTAA 4 cut(s) 102, 263, 302, 540
MslI CAYNNNNRTG 2 cut(s) 521, 654
MspI CCGG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 325, 601, 610
NdeI CATATG 1 cut(s) 385
NdeII GATC 1 cut(s) 489
NlaIII CATG 4 cut(s) 323, 434, 526, 752
NmuCI GTSAC 2 cut(s) 125, 346
NspI RCATGY 1 cut(s) 526
PciI ACATGT 1 cut(s) 522
PctI GAATGC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 327, 778
PleI GAGTC 2 cut(s) 122, 734
PpsI GAGTC 2 cut(s) 122, 734
PscI ACATGT 1 cut(s) 522
PshAI GACNNNNGTC 1 cut(s) 215
PsiI TTATAA 2 cut(s) 119, 591
PspPI GGNCC 1 cut(s) 267
RsaI GTAC 3 cut(s) 244, 334, 660
RsaNI GTAC 3 cut(s) 243, 333, 659
RseI CAYNNNNRTG 2 cut(s) 521, 654
SaqAI TTAA 4 cut(s) 102, 263, 302, 540
SatI GCNGC 2 cut(s) 326, 777
Sau3AI GATC 1 cut(s) 489
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 2 cut(s) 122, 735
SetI ASST 9 cut(s) 147, 244, 269, 318, 346, 535, 597, 745, 768
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 521, 654
Sse9I AATT 4 cut(s) 105, 408, 413, 614
SspI AATATT 2 cut(s) 100, 396
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 2 cut(s) 226, 533
TaaI ACNGT 2 cut(s) 332, 571
TaiI ACGT 2 cut(s) 147, 768
TaqI TCGA 1 cut(s) 219
TasI AATT 4 cut(s) 105, 408, 413, 614
Tru1I TTAA 4 cut(s) 102, 263, 302, 540
Tru9I TTAA 4 cut(s) 102, 263, 302, 540
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 2 cut(s) 125, 346
TseI GCWGC 2 cut(s) 325, 776
Tsp45I GTSAC 2 cut(s) 125, 346
TspDTI ATGAA 3 cut(s) 87, 204, 420
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 1 cut(s) 576
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 526
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.