TdcA1-ORF2 protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 198 |
| AclWI | GGATC | 1 cut(s) | 529 |
| AcsI | RAATTY | 1 cut(s) | 340 |
| AcuI | CTGAAG | 2 cut(s) | 224, 294 |
| AflIII | ACRYGT | 1 cut(s) | 129 |
| AgsI | TTSAA | 2 cut(s) | 364, 476 |
| AluBI | AGCT | 1 cut(s) | 202 |
| AluI | AGCT | 1 cut(s) | 202 |
| Alw21I | GWGCWC | 1 cut(s) | 299 |
| Alw26I | GTCTC | 2 cut(s) | 138, 473 |
| Alw44I | GTGCAC | 1 cut(s) | 295 |
| AlwI | GGATC | 1 cut(s) | 529 |
| ApaLI | GTGCAC | 1 cut(s) | 295 |
| ApoI | RAATTY | 1 cut(s) | 340 |
| AseI | ATTAAT | 1 cut(s) | 348 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 318 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 362 |
| BaeGI | GKGCMC | 1 cut(s) | 299 |
| Bbv12I | GWGCWC | 1 cut(s) | 299 |
| BccI | CCATC | 1 cut(s) | 415 |
| BclI | TGATCA | 1 cut(s) | 96 |
| BcoDI | GTCTC | 2 cut(s) | 138, 473 |
| BfaI | CTAG | 3 cut(s) | 309, 411, 431 |
| BmiI | GGNNCC | 1 cut(s) | 35 |
| BmsI | GCATC | 1 cut(s) | 508 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 209, 241 |
| BsaI | GGTCTC | 1 cut(s) | 473 |
| BsaJI | CCNNGG | 1 cut(s) | 140 |
| BseDI | CCNNGG | 1 cut(s) | 140 |
| BseMII | CTCAG | 1 cut(s) | 435 |
| BseSI | GKGCMC | 1 cut(s) | 299 |
| Bsh1285I | CGRYCG | 1 cut(s) | 425 |
| BsiEI | CGRYCG | 1 cut(s) | 425 |
| BsiHKAI | GWGCWC | 1 cut(s) | 299 |
| BsmAI | GTCTC | 2 cut(s) | 138, 473 |
| Bso31I | GGTCTC | 1 cut(s) | 473 |
| Bsp1286I | GDGCHC | 1 cut(s) | 299 |
| Bsp143I | GATC | 3 cut(s) | 96, 422, 534 |
| BspCNI | CTCAG | 1 cut(s) | 436 |
| BspLI | GGNNCC | 1 cut(s) | 35 |
| BspPI | GGATC | 1 cut(s) | 529 |
| BspTNI | GGTCTC | 1 cut(s) | 473 |
| BssECI | CCNNGG | 1 cut(s) | 140 |
| BssMI | GATC | 3 cut(s) | 96, 422, 534 |
| BssT1I | CCWWGG | 1 cut(s) | 140 |
| Bst4CI | ACNGT | 1 cut(s) | 178 |
| Bst6I | CTCTTC | 1 cut(s) | 471 |
| BstDEI | CTNAG | 2 cut(s) | 114, 444 |
| BstKTI | GATC | 3 cut(s) | 99, 425, 537 |
| BstMAI | GTCTC | 2 cut(s) | 138, 473 |
| BstMBI | GATC | 3 cut(s) | 96, 422, 534 |
| BstMCI | CGRYCG | 1 cut(s) | 425 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 208, 217 |
| BstNSI | RCATGY | 1 cut(s) | 133 |
| BstSLI | GKGCMC | 1 cut(s) | 299 |
| BtsIMutI | CAGTG | 1 cut(s) | 183 |
| CviAII | CATG | 2 cut(s) | 38, 130 |
| CviJI | RGCY | 2 cut(s) | 202, 500 |
| CviKI_1 | RGCY | 2 cut(s) | 202, 500 |
| DdeI | CTNAG | 2 cut(s) | 114, 444 |
| DpnI | GATC | 3 cut(s) | 98, 424, 536 |
| DpnII | GATC | 3 cut(s) | 96, 422, 534 |
| Eam1104I | CTCTTC | 1 cut(s) | 471 |
| EarI | CTCTTC | 1 cut(s) | 471 |
| Eco130I | CCWWGG | 1 cut(s) | 140 |
| Eco31I | GGTCTC | 1 cut(s) | 473 |
| Eco57I | CTGAAG | 2 cut(s) | 224, 294 |
| EcoT14I | CCWWGG | 1 cut(s) | 140 |
| ErhI | CCWWGG | 1 cut(s) | 140 |
| FaeI | CATG | 2 cut(s) | 41, 133 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 456, 488 |
| FatI | CATG | 2 cut(s) | 37, 129 |
| FbaI | TGATCA | 1 cut(s) | 96 |
| FspBI | CTAG | 3 cut(s) | 309, 411, 431 |
| Hin1II | CATG | 2 cut(s) | 41, 133 |
| HinfI | GANTC | 1 cut(s) | 21 |
| HphI | GGTGA | 2 cut(s) | 16, 362 |
| Hpy166II | GTNNAC | 1 cut(s) | 297 |
| Hpy188I | TCNGA | 4 cut(s) | 33, 324, 334, 445 |
| Hpy188III | TCNNGA | 1 cut(s) | 420 |
| Hpy8I | GTNNAC | 1 cut(s) | 297 |
| HpyAV | CCTTC | 1 cut(s) | 58 |
| HpyCH4III | ACNGT | 1 cut(s) | 178 |
| HpyCH4IV | ACGT | 1 cut(s) | 528 |
| HpyCH4V | TGCA | 4 cut(s) | 41, 297, 521, 547 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 208, 217 |
| HpyF3I | CTNAG | 2 cut(s) | 114, 444 |
| HpySE526I | ACGT | 1 cut(s) | 528 |
| Hsp92II | CATG | 2 cut(s) | 41, 133 |
| Ksp22I | TGATCA | 1 cut(s) | 96 |
| Kzo9I | GATC | 3 cut(s) | 96, 422, 534 |
| LmnI | GCTCC | 1 cut(s) | 550 |
| LpnPI | CCDG | 3 cut(s) | 90, 366, 533 |
| LweI | GCATC | 1 cut(s) | 508 |
| MaeI | CTAG | 3 cut(s) | 309, 411, 431 |
| MaeII | ACGT | 1 cut(s) | 528 |
| MaeIII | GTNAC | 2 cut(s) | 354, 426 |
| MalI | GATC | 3 cut(s) | 98, 424, 536 |
| MboI | GATC | 3 cut(s) | 96, 422, 534 |
| MboII | GAAGA | 8 cut(s) | 92, 217, 287, 290, 326, 460, 476, 488 |
| MhlI | GDGCHC | 1 cut(s) | 299 |
| MluCI | AATT | 5 cut(s) | 15, 221, 340, 542, 606 |
| MnlI | CCTC | 3 cut(s) | 54, 229, 411 |
| MroXI | GAANNNNTTC | 1 cut(s) | 318 |
| MseI | TTAA | 3 cut(s) | 147, 267, 348 |
| MslI | CAYNNNNRTG | 2 cut(s) | 128, 261 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 208, 217 |
| NdeII | GATC | 3 cut(s) | 96, 422, 534 |
| NlaIII | CATG | 2 cut(s) | 41, 133 |
| NlaIV | GGNNCC | 1 cut(s) | 35 |
| NmuCI | GTSAC | 2 cut(s) | 354, 426 |
| NspI | RCATGY | 1 cut(s) | 133 |
| PciI | ACATGT | 1 cut(s) | 129 |
| PdmI | GAANNNNTTC | 1 cut(s) | 318 |
| PfeI | GAWTC | 1 cut(s) | 21 |
| Ple19I | CGATCG | 1 cut(s) | 425 |
| PscI | ACATGT | 1 cut(s) | 129 |
| PshBI | ATTAAT | 1 cut(s) | 348 |
| PsiI | TTATAA | 1 cut(s) | 198 |
| PspN4I | GGNNCC | 1 cut(s) | 35 |
| PvuI | CGATCG | 1 cut(s) | 425 |
| RseI | CAYNNNNRTG | 2 cut(s) | 128, 261 |
| SaqAI | TTAA | 3 cut(s) | 147, 267, 348 |
| Sau3AI | GATC | 3 cut(s) | 96, 422, 534 |
| SduI | GDGCHC | 1 cut(s) | 299 |
| SetI | ASST | 6 cut(s) | 46, 142, 204, 356, 531, 587 |
| SfaNI | GCATC | 1 cut(s) | 508 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 128, 261 |
| Sse9I | AATT | 5 cut(s) | 15, 221, 340, 542, 606 |
| SspMI | CTAG | 3 cut(s) | 309, 411, 431 |
| StyI | CCWWGG | 1 cut(s) | 140 |
| TaaI | ACNGT | 1 cut(s) | 178 |
| TaiI | ACGT | 1 cut(s) | 531 |
| TaqI | TCGA | 2 cut(s) | 386, 421 |
| TasI | AATT | 5 cut(s) | 15, 221, 340, 542, 606 |
| TfiI | GAWTC | 1 cut(s) | 21 |
| Tru1I | TTAA | 3 cut(s) | 147, 267, 348 |
| Tru9I | TTAA | 3 cut(s) | 147, 267, 348 |
| TscAI | CASTG | 1 cut(s) | 183 |
| TseFI | GTSAC | 2 cut(s) | 354, 426 |
| Tsp45I | GTSAC | 2 cut(s) | 354, 426 |
| TspDTI | ATGAA | 3 cut(s) | 27, 450, 605 |
| TspGWI | ACGGA | 1 cut(s) | 182 |
| TspRI | CASTG | 1 cut(s) | 183 |
| VneI | GTGCAC | 1 cut(s) | 295 |
| VspI | ATTAAT | 1 cut(s) | 348 |
| XapI | RAATTY | 1 cut(s) | 340 |
| XceI | RCATGY | 1 cut(s) | 133 |
| XmnI | GAANNNNTTC | 1 cut(s) | 318 |
| XspI | CTAG | 3 cut(s) | 309, 411, 431 |