TdcA1-ORF2 protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 678 |
| AatII | GACGTC | 1 cut(s) | 837 |
| AccB1I | GGYRCC | 1 cut(s) | 206 |
| AciI | CCGC | 1 cut(s) | 370 |
| AcoI | YGGCCR | 1 cut(s) | 486 |
| AcsI | RAATTY | 3 cut(s) | 172, 701, 847 |
| AcuI | CTGAAG | 2 cut(s) | 321, 582 |
| AcyI | GRCGYC | 1 cut(s) | 834 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 350 |
| AflIII | ACRYGT | 2 cut(s) | 609, 647 |
| AgsI | TTSAA | 6 cut(s) | 257, 418, 512, 685, 708, 728 |
| AjiI | CACGTC | 1 cut(s) | 251 |
| AluBI | AGCT | 2 cut(s) | 77, 280 |
| AluI | AGCT | 2 cut(s) | 77, 280 |
| Alw21I | GWGCWC | 1 cut(s) | 781 |
| Alw26I | GTCTC | 1 cut(s) | 618 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 80 |
| AoxI | GGCC | 3 cut(s) | 458, 466, 486 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| ApoI | RAATTY | 3 cut(s) | 172, 701, 847 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 798 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AspS9I | GGNCC | 3 cut(s) | 102, 353, 467 |
| AvaII | GGWCC | 2 cut(s) | 102, 353 |
| BalI | TGGCCA | 1 cut(s) | 488 |
| BanI | GGYRCC | 1 cut(s) | 206 |
| BauI | CACGAG | 1 cut(s) | 141 |
| BbsI | GAAGAC | 1 cut(s) | 245 |
| Bbv12I | GWGCWC | 1 cut(s) | 781 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 2 cut(s) | 179, 866 |
| BclI | TGATCA | 2 cut(s) | 157, 274 |
| BcoDI | GTCTC | 1 cut(s) | 618 |
| BfaI | CTAG | 1 cut(s) | 789 |
| BfmI | CTRYAG | 4 cut(s) | 177, 213, 348, 462 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme18I | GGWCC | 2 cut(s) | 102, 353 |
| BmgBI | CACGTC | 1 cut(s) | 251 |
| BmgT120I | GGNCC | 3 cut(s) | 102, 353, 467 |
| BmiI | GGNNCC | 3 cut(s) | 103, 104, 208 |
| BmrI | ACTGGG | 1 cut(s) | 240 |
| BmuI | ACTGGG | 1 cut(s) | 240 |
| BpiI | GAAGAC | 1 cut(s) | 245 |
| BsaHI | GRCGYC | 1 cut(s) | 834 |
| BsaJI | CCNNGG | 1 cut(s) | 620 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 350 |
| Bse1I | ACTGG | 3 cut(s) | 235, 330, 854 |
| Bse3DI | GCAATG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 1 cut(s) | 620 |
| BseGI | GGATG | 1 cut(s) | 24 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 350 |
| BseMI | GCAATG | 1 cut(s) | 132 |
| BseMII | CTCAG | 1 cut(s) | 767 |
| BseNI | ACTGG | 3 cut(s) | 235, 330, 854 |
| BseRI | GAGGAG | 1 cut(s) | 399 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BshFI | GGCC | 3 cut(s) | 460, 468, 488 |
| BshNI | GGYRCC | 1 cut(s) | 206 |
| BsiHKAI | GWGCWC | 1 cut(s) | 781 |
| BslFI | GGGAC | 2 cut(s) | 88, 821 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 350 |
| BsmAI | GTCTC | 1 cut(s) | 618 |
| BsmFI | GGGAC | 2 cut(s) | 88, 821 |
| BsmI | GAATGC | 3 cut(s) | 397, 424, 826 |
| BsnI | GGCC | 3 cut(s) | 460, 468, 488 |
| Bsp1286I | GDGCHC | 1 cut(s) | 781 |
| Bsp143I | GATC | 3 cut(s) | 82, 157, 274 |
| BspACI | CCGC | 1 cut(s) | 370 |
| BspANI | GGCC | 3 cut(s) | 460, 468, 488 |
| BspCNI | CTCAG | 1 cut(s) | 766 |
| BspLI | GGNNCC | 3 cut(s) | 103, 104, 208 |
| BspQI | GCTCTTC | 1 cut(s) | 297 |
| BspT107I | GGYRCC | 1 cut(s) | 206 |
| BsrDI | GCAATG | 1 cut(s) | 132 |
| BsrI | ACTGG | 3 cut(s) | 235, 330, 854 |
| BssECI | CCNNGG | 1 cut(s) | 620 |
| BssMI | GATC | 3 cut(s) | 82, 157, 274 |
| BssNI | GRCGYC | 1 cut(s) | 834 |
| BssSI | CACGAG | 1 cut(s) | 141 |
| BssT1I | CCWWGG | 1 cut(s) | 620 |
| Bst2BI | CACGAG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 2 cut(s) | 508, 658 |
| Bst6I | CTCTTC | 2 cut(s) | 297, 621 |
| BstACI | GRCGYC | 1 cut(s) | 834 |
| BstDEI | CTNAG | 1 cut(s) | 753 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 348 |
| BstF5I | GGATG | 1 cut(s) | 24 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstKTI | GATC | 3 cut(s) | 85, 160, 277 |
| BstMAI | GTCTC | 1 cut(s) | 618 |
| BstMBI | GATC | 3 cut(s) | 82, 157, 274 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 206 |
| BstNSI | RCATGY | 2 cut(s) | 613, 651 |
| BstSFI | CTRYAG | 4 cut(s) | 177, 213, 348, 462 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 1 cut(s) | 245 |
| BsuRI | GGCC | 3 cut(s) | 460, 468, 488 |
| BtrI | CACGTC | 1 cut(s) | 251 |
| BtsCI | GGATG | 1 cut(s) | 24 |
| CaiI | CAGNNNCTG | 1 cut(s) | 80 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 3 cut(s) | 102, 353, 467 |
| CviAII | CATG | 5 cut(s) | 90, 165, 518, 610, 648 |
| CviJI | RGCY | 8 cut(s) | 34, 77, 280, 329, 343, 460, 468, 488 |
| CviKI_1 | RGCY | 8 cut(s) | 34, 77, 280, 329, 343, 460, 468, 488 |
| DdeI | CTNAG | 1 cut(s) | 753 |
| DpnI | GATC | 3 cut(s) | 84, 159, 276 |
| DpnII | GATC | 3 cut(s) | 82, 157, 274 |
| EaeI | YGGCCR | 1 cut(s) | 486 |
| Eam1104I | CTCTTC | 2 cut(s) | 297, 621 |
| EarI | CTCTTC | 2 cut(s) | 297, 621 |
| Eco130I | CCWWGG | 1 cut(s) | 620 |
| Eco147I | AGGCCT | 1 cut(s) | 460 |
| Eco47I | GGWCC | 2 cut(s) | 102, 353 |
| Eco57I | CTGAAG | 2 cut(s) | 321, 582 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 348 |
| EcoO109I | RGGNCCY | 1 cut(s) | 102 |
| EcoT14I | CCWWGG | 1 cut(s) | 620 |
| ErhI | CCWWGG | 1 cut(s) | 620 |
| FaeI | CATG | 5 cut(s) | 93, 168, 521, 613, 651 |
| FaqI | GGGAC | 2 cut(s) | 88, 821 |
| FatI | CATG | 5 cut(s) | 89, 164, 517, 609, 647 |
| FauI | CCCGC | 1 cut(s) | 363 |
| FauNDI | CATATG | 1 cut(s) | 472 |
| FbaI | TGATCA | 2 cut(s) | 157, 274 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| FokI | GGATG | 1 cut(s) | 11 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| FspBI | CTAG | 1 cut(s) | 789 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 75 |
| HaeIII | GGCC | 3 cut(s) | 460, 468, 488 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1I | GRCGYC | 1 cut(s) | 834 |
| Hin1II | CATG | 5 cut(s) | 93, 168, 521, 613, 651 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HinfI | GANTC | 4 cut(s) | 189, 550, 751, 805 |
| Hpy166II | GTNNAC | 3 cut(s) | 134, 248, 859 |
| Hpy188I | TCNGA | 6 cut(s) | 239, 441, 555, 654, 804, 814 |
| Hpy188III | TCNNGA | 5 cut(s) | 338, 628, 748, 755, 838 |
| Hpy8I | GTNNAC | 3 cut(s) | 134, 248, 859 |
| HpyCH4III | ACNGT | 2 cut(s) | 508, 658 |
| HpyCH4IV | ACGT | 2 cut(s) | 250, 834 |
| HpyCH4V | TGCA | 4 cut(s) | 50, 125, 148, 395 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 206 |
| HpyF3I | CTNAG | 1 cut(s) | 753 |
| HpySE526I | ACGT | 2 cut(s) | 250, 834 |
| Hsp92I | GRCGYC | 1 cut(s) | 834 |
| Hsp92II | CATG | 5 cut(s) | 93, 168, 521, 613, 651 |
| HspAI | GCGC | 1 cut(s) | 4 |
| KflI | GGGWCCC | 1 cut(s) | 102 |
| Ksp22I | TGATCA | 2 cut(s) | 157, 274 |
| Kzo9I | GATC | 3 cut(s) | 82, 157, 274 |
| LguI | GCTCTTC | 1 cut(s) | 297 |
| LpnPI | CCDG | 8 cut(s) | 55, 216, 336, 343, 444, 450, 740, 867 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| MaeI | CTAG | 1 cut(s) | 789 |
| MaeII | ACGT | 2 cut(s) | 250, 834 |
| MaeIII | GTNAC | 3 cut(s) | 292, 433, 830 |
| MalI | GATC | 3 cut(s) | 84, 159, 276 |
| MboI | GATC | 3 cut(s) | 82, 157, 274 |
| MboII | GAAGA | 8 cut(s) | 194, 245, 314, 559, 608, 697, 770, 829 |
| MfeI | CAATTG | 2 cut(s) | 413, 723 |
| MhlI | GDGCHC | 1 cut(s) | 781 |
| MlsI | TGGCCA | 1 cut(s) | 488 |
| MluCI | AATT | 9 cut(s) | 172, 193, 413, 495, 639, 667, 701, 723, 847 |
| MluNI | TGGCCA | 1 cut(s) | 488 |
| MlyI | GAGTC | 2 cut(s) | 183, 745 |
| MmeI | TCCRAC | 1 cut(s) | 380 |
| MnlI | CCTC | 4 cut(s) | 354, 377, 537, 709 |
| Mox20I | TGGCCA | 1 cut(s) | 488 |
| MroXI | GAANNNNTTC | 1 cut(s) | 798 |
| MscI | TGGCCA | 1 cut(s) | 488 |
| MseI | TTAA | 1 cut(s) | 579 |
| MslI | CAYNNNNRTG | 2 cut(s) | 608, 741 |
| Msp20I | TGGCCA | 1 cut(s) | 488 |
| MunI | CAATTG | 2 cut(s) | 413, 723 |
| Mva1269I | GAATGC | 3 cut(s) | 397, 424, 826 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 206 |
| NdeI | CATATG | 1 cut(s) | 472 |
| NdeII | GATC | 3 cut(s) | 82, 157, 274 |
| NlaIII | CATG | 5 cut(s) | 93, 168, 521, 613, 651 |
| NlaIV | GGNNCC | 3 cut(s) | 103, 104, 208 |
| NmuCI | GTSAC | 2 cut(s) | 433, 830 |
| NspI | RCATGY | 2 cut(s) | 613, 651 |
| PceI | AGGCCT | 1 cut(s) | 460 |
| PciI | ACATGT | 2 cut(s) | 609, 647 |
| PciSI | GCTCTTC | 1 cut(s) | 297 |
| PctI | GAATGC | 3 cut(s) | 397, 424, 826 |
| PdmI | GAANNNNTTC | 1 cut(s) | 798 |
| PfeI | GAWTC | 2 cut(s) | 550, 805 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| PleI | GAGTC | 2 cut(s) | 183, 745 |
| PpsI | GAGTC | 2 cut(s) | 183, 745 |
| PpuMI | RGGWCCY | 1 cut(s) | 102 |
| PscI | ACATGT | 2 cut(s) | 609, 647 |
| PsiI | TTATAA | 1 cut(s) | 678 |
| Psp5II | RGGWCCY | 1 cut(s) | 102 |
| PspN4I | GGNNCC | 3 cut(s) | 103, 104, 208 |
| PspPI | GGNCC | 3 cut(s) | 102, 353, 467 |
| PspPPI | RGGWCCY | 1 cut(s) | 102 |
| PstNI | CAGNNNCTG | 1 cut(s) | 80 |
| RseI | CAYNNNNRTG | 2 cut(s) | 608, 741 |
| SapI | GCTCTTC | 1 cut(s) | 297 |
| SaqAI | TTAA | 1 cut(s) | 579 |
| SatI | GCNGC | 1 cut(s) | 75 |
| Sau3AI | GATC | 3 cut(s) | 82, 157, 274 |
| Sau96I | GGNCC | 3 cut(s) | 102, 353, 467 |
| SchI | GAGTC | 2 cut(s) | 183, 745 |
| SduI | GDGCHC | 1 cut(s) | 781 |
| SfcI | CTRYAG | 4 cut(s) | 177, 213, 348, 462 |
| SinI | GGWCC | 2 cut(s) | 102, 353 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 608, 741 |
| Sse9I | AATT | 9 cut(s) | 172, 193, 413, 495, 639, 667, 701, 723, 847 |
| SseBI | AGGCCT | 1 cut(s) | 460 |
| SsiI | CCGC | 1 cut(s) | 370 |
| SspMI | CTAG | 1 cut(s) | 789 |
| StuI | AGGCCT | 1 cut(s) | 460 |
| StyI | CCWWGG | 1 cut(s) | 620 |
| TaaI | ACNGT | 2 cut(s) | 508, 658 |
| TaiI | ACGT | 2 cut(s) | 253, 837 |
| TaqI | TCGA | 3 cut(s) | 627, 714, 870 |
| TaqII | GACCGA | 1 cut(s) | 458 |
| TasI | AATT | 9 cut(s) | 172, 193, 413, 495, 639, 667, 701, 723, 847 |
| TfiI | GAWTC | 2 cut(s) | 550, 805 |
| Tru1I | TTAA | 1 cut(s) | 579 |
| Tru9I | TTAA | 1 cut(s) | 579 |
| TseFI | GTSAC | 2 cut(s) | 433, 830 |
| TseI | GCWGC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 2 cut(s) | 433, 830 |
| TspDTI | ATGAA | 1 cut(s) | 507 |
| VpaK11BI | GGWCC | 2 cut(s) | 102, 353 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 348 |
| XapI | RAATTY | 3 cut(s) | 172, 701, 847 |
| XceI | RCATGY | 2 cut(s) | 613, 651 |
| XmnI | GAANNNNTTC | 1 cut(s) | 798 |
| XspI | CTAG | 1 cut(s) | 789 |
| ZraI | GACGTC | 1 cut(s) | 835 |