RLG00000030444

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000224
Physical Location & Seq
Reverse (-)
61509562 .. 61514638
5077 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030444

Sequence Viewer

Length: 909 bp
ATGTCGAAACGTCTTCGTTCGAACGTTTCCGGTGCCCAAAAGGCTAATATTGGTGTCACTTTGACAAAACGGCGACGTGTACAAGCAAATGAACCTTCACTTCCAAATTCTTTGCAAGATGAACTTGATGTTCCTGATATGCCTACCTCTAATAGAACTACCCAAAGGGCTATTGCTAGTACCATTATCCAAAGGCCTACTGTTGGTGACTCAATGAATGCACACGTTCAGTGCCAAACTACTAACCAGCCATCAATAAATGCTACAACTGAAGGGTTGAATGATGCTAGAACATCATTCGATATCCAAGGATCTACTACAGAAGGTCCAGAAAAAAAGTGCGTGGAAAGACAAGAGGAAGTAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACTACTAAGTACGACGTTGACATGTCTCTACCTTGGGTTAAGAGATATGTGAATAAATCTTTTGGAACAGTGTTTGCTAACTTCTGTTATAAGCTGAAGAAGCATTTTGAGCAATTCTCAACAAAAGAGGAAGCATTAGAAAATAAACACAAAGATGTTAAAACTGAAGAAGAATGGGCTTTTCTGTGCACTTATTTTTCTAGTGAAGATTTCCAGGCTGCACAATCAGGGGAGATGCTAGGTGCAATTGAATGCTTTGAAATGGAGTACAAAAGCATTAAAAAAGGTTGGGACTTGGGAGCGAAAGAATTATGGGATCAAATGGTTAAGATGCGAACTGAGACAACCCTTCCTGATGGGACTCGAACTATGAATGATGATGAAATATGTGCAAAGGCAAGCCTTGCGAATTGGGAGAATAAGAGACTGTGGCGGTGGATTTTAACGGAGGAAGCTGAGAATAAGCAGAACGACGACATGAAGTGCCGAAATGGAAGCAACTGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

303

Amino Acids

34.65

Weight (kDa)

6.08

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 1 cut(s) 832
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 319, 723
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 3 cut(s) 291, 515, 585
AfaI GTAC 4 cut(s) 81, 181, 410, 668
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 3 cut(s) 76, 223, 420
AgsI TTSAA 3 cut(s) 280, 650, 659
AjiI CACGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 612
AluBI AGCT 2 cut(s) 493, 854
AluI AGCT 2 cut(s) 493, 854
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 3 cut(s) 429, 734, 817
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 2 cut(s) 319, 723
AoxI GGCC 1 cut(s) 194
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 2 cut(s) 37, 590
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 1 cut(s) 604
BccI CCATC 2 cut(s) 259, 749
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 614
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 429, 734, 817
BfaI CTAG 4 cut(s) 177, 288, 600, 638
BfmI CTRYAG 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 619
Bme1390I CCNGG 1 cut(s) 614
Bme18I GGWCC 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 614
BmsI GCATC 3 cut(s) 274, 624, 720
BpiI GAAGAC 1 cut(s) 5
BplI GAGNNNNNCTC 2 cut(s) 500, 532
Bpu14I TTCGAA 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 307, 431
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 307, 431
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 729, 846
BseSI GKGCMC 2 cut(s) 37, 590
BseXI GCAGC 1 cut(s) 604
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 590
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 704, 772
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 3 cut(s) 429, 734, 817
BsmFI GGGAC 2 cut(s) 704, 772
BsmI GAATGC 2 cut(s) 223, 656
BsnI GGCC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 37, 590
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 3 cut(s) 311, 387, 715
BspACI CCGC 1 cut(s) 832
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 730, 847
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 2 cut(s) 319, 723
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 307, 431
BssMI GATC 3 cut(s) 311, 387, 715
BssT1I CCWWGG 2 cut(s) 307, 431
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 4 cut(s) 202, 469, 828, 902
BstAPI GCANNNNNTGC 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 3 cut(s) 405, 738, 855
BstKTI GATC 3 cut(s) 314, 390, 718
BstMAI GTCTC 3 cut(s) 429, 734, 817
BstMBI GATC 3 cut(s) 311, 387, 715
BstMWI GCNNNNNNNGC 4 cut(s) 41, 499, 508, 803
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 612
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 2 cut(s) 37, 590
BstV1I GCAGC 1 cut(s) 604
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 1 cut(s) 196
BtrI CACGTC 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 236, 474
Cac8I GCNNGC 1 cut(s) 799
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 4 cut(s) 80, 180, 409, 667
CviAII CATG 2 cut(s) 421, 877
CviJI RGCY 9 cut(s) 44, 170, 196, 250, 493, 578, 617, 801, 854
CviKI_1 RGCY 9 cut(s) 44, 170, 196, 250, 493, 578, 617, 801, 854
CviQI GTAC 4 cut(s) 80, 180, 409, 667
DdeI CTNAG 3 cut(s) 405, 738, 855
DpnI GATC 3 cut(s) 313, 389, 717
DpnII GATC 3 cut(s) 311, 387, 715
Eco130I CCWWGG 2 cut(s) 307, 431
Eco147I AGGCCT 1 cut(s) 196
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 3 cut(s) 291, 515, 585
EcoRII CCWGG 1 cut(s) 612
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 307, 431
ErhI CCWWGG 2 cut(s) 307, 431
FaeI CATG 2 cut(s) 424, 880
FaiI YATR 8 cut(s) 140, 422, 447, 489, 712, 770, 787, 878
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 2 cut(s) 704, 772
FatI CATG 2 cut(s) 420, 876
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 1 cut(s) 618
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 4 cut(s) 177, 288, 600, 638
GluI GCNGC 1 cut(s) 618
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 30
Hin1II CATG 2 cut(s) 424, 880
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 2 cut(s) 209, 760
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 3 cut(s) 80, 418, 588
Hpy188III TCNNGA 3 cut(s) 134, 329, 752
Hpy8I GTNNAC 3 cut(s) 80, 418, 588
Hpy99I CGWCG 3 cut(s) 78, 416, 875
HpyAV CCTTC 4 cut(s) 105, 266, 317, 758
HpyCH4III ACNGT 4 cut(s) 202, 469, 828, 902
HpyCH4IV ACGT 5 cut(s) 10, 24, 76, 225, 414
HpyCH4V TGCA 6 cut(s) 115, 221, 588, 620, 644, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 499, 508, 803
HpyF3I CTNAG 3 cut(s) 405, 738, 855
HpySE526I ACGT 5 cut(s) 10, 24, 76, 225, 414
Hsp92II CATG 2 cut(s) 424, 880
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 3 cut(s) 311, 387, 715
LmnI GCTCC 1 cut(s) 698
LpnPI CCDG 9 cut(s) 43, 147, 260, 342, 381, 599, 612, 626, 765
Lsp1109I GCAGC 1 cut(s) 604
LweI GCATC 3 cut(s) 274, 624, 720
MaeI CTAG 4 cut(s) 177, 288, 600, 638
MaeII ACGT 5 cut(s) 10, 24, 76, 225, 414
MaeIII GTNAC 2 cut(s) 55, 206
MalI GATC 3 cut(s) 313, 389, 717
MboI GATC 3 cut(s) 311, 387, 715
MboII GAAGA 6 cut(s) 5, 383, 508, 578, 581, 617
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 37, 590
MluCI AATT 5 cut(s) 106, 512, 645, 707, 808
MlyI GAGTC 2 cut(s) 203, 754
MnlI CCTC 4 cut(s) 157, 349, 520, 841
MseI TTAA 5 cut(s) 438, 558, 678, 726, 842
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 614
MunI CAATTG 1 cut(s) 645
Mva1269I GAATGC 2 cut(s) 223, 656
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 4 cut(s) 41, 499, 508, 803
NdeII GATC 3 cut(s) 311, 387, 715
NlaIII CATG 2 cut(s) 424, 880
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 2 cut(s) 55, 206
NspI RCATGY 1 cut(s) 424
NspV TTCGAA 1 cut(s) 20
PceI AGGCCT 1 cut(s) 196
PciI ACATGT 1 cut(s) 420
PctI GAATGC 2 cut(s) 223, 656
PkrI GCNGC 1 cut(s) 619
PleI GAGTC 2 cut(s) 203, 754
PpsI GAGTC 2 cut(s) 203, 754
PscI ACATGT 1 cut(s) 420
PsiI TTATAA 1 cut(s) 489
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 326
PsuI RGATCY 1 cut(s) 311
RsaI GTAC 4 cut(s) 81, 181, 410, 668
RsaNI GTAC 4 cut(s) 80, 180, 409, 667
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 5 cut(s) 438, 558, 678, 726, 842
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 3 cut(s) 311, 387, 715
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 2 cut(s) 203, 754
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 2 cut(s) 37, 590
SfaNI GCATC 3 cut(s) 274, 624, 720
SfcI CTRYAG 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 5 cut(s) 106, 512, 645, 707, 808
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 1 cut(s) 832
SspI AATATT 1 cut(s) 49
SspMI CTAG 4 cut(s) 177, 288, 600, 638
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 612
StyI CCWWGG 2 cut(s) 307, 431
TaaI ACNGT 4 cut(s) 202, 469, 828, 902
TaiI ACGT 5 cut(s) 13, 27, 79, 228, 417
TaqI TCGA 4 cut(s) 5, 20, 300, 763
TasI AATT 5 cut(s) 106, 512, 645, 707, 808
TatI WGTACW 2 cut(s) 79, 666
Tru1I TTAA 5 cut(s) 438, 558, 678, 726, 842
Tru9I TTAA 5 cut(s) 438, 558, 678, 726, 842
TscAI CASTG 2 cut(s) 236, 474
TseFI GTSAC 2 cut(s) 55, 206
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 2 cut(s) 55, 206
TspDTI ATGAA 6 cut(s) 105, 135, 230, 785, 795, 893
TspGWI ACGGA 1 cut(s) 860
TspRI CASTG 2 cut(s) 236, 474
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 106
XceI RCATGY 1 cut(s) 424
XspI CTAG 4 cut(s) 177, 288, 600, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.