Rroxscaffold_1G00075590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000224
Physical Location & Seq
Forward (+)
96278298 .. 96281808
3511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075590.1

Sequence Viewer

Length: 285 bp
ATGATGAAATTTGTGCAAAAGTCCTCGGAGTCAAATCAAGGCTACATCAAGGGTTGTGGTTTTGGCCCTAGATCTCCACCATCAAGAGTCTCTCATTCGTCGATAAATGAAATGTCTGGAAAGAACAAAATGTTGCAAGAACAGCTTCAAGAGACTCAACACCTTGTAGGGACTCAACAACAAAAGATTGATGCACAAAATGAGGTGATCCAAAGATTGGAGGAGCAAGCCAAAAAGTTTGAGGAGTTCATGGCTAACTTTTCCAGGCAACATCCATCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.74

Weight (kDa)

8.85

Isoelectric Point (pI)

68.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 217
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 94, 146
AlwI GGATC 1 cut(s) 202
AoxI GGCC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 217
BccI CCATC 2 cut(s) 88, 283
BciT130I CCWGG 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 94, 146
BfaI CTAG 1 cut(s) 69
BglII AGATCT 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 236, 257
BshFI GGCC 1 cut(s) 66
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 2 cut(s) 94, 146
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 71, 207
BspANI GGCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 71, 207
Bst2UI CCWGG 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 228
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 74, 210
BstMAI GTCTC 2 cut(s) 94, 146
BstMBI GATC 2 cut(s) 71, 207
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 65
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 1 cut(s) 250
CviJI RGCY 5 cut(s) 42, 66, 145, 230, 254
CviKI_1 RGCY 5 cut(s) 42, 66, 145, 230, 254
DpnI GATC 2 cut(s) 73, 209
DpnII GATC 2 cut(s) 71, 207
EcoRII CCWGG 1 cut(s) 263
FaeI CATG 1 cut(s) 253
FaiI YATR 1 cut(s) 251
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 249
FokI GGATG 1 cut(s) 258
FspBI CTAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 1 cut(s) 253
HinfI GANTC 4 cut(s) 29, 87, 154, 172
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 3 cut(s) 84, 117, 149
Hpy99I CGWCG 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 16, 136, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
Hsp92II CATG 1 cut(s) 253
Kzo9I GATC 2 cut(s) 71, 207
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 102, 250, 277
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 69
MalI GATC 2 cut(s) 73, 209
MboI GATC 2 cut(s) 71, 207
MflI RGATCY 1 cut(s) 71
MluCI AATT 1 cut(s) 8
MlyI GAGTC 4 cut(s) 38, 96, 148, 166
MnlI CCTC 4 cut(s) 34, 196, 214, 235
MroXI GAANNNNTTC 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 2 cut(s) 71, 207
NlaIII CATG 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 144
PflMI CCANNNNNTGG 1 cut(s) 217
PleI GAGTC 4 cut(s) 37, 95, 148, 166
PpsI GAGTC 4 cut(s) 37, 95, 148, 166
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 71
Sau3AI GATC 2 cut(s) 71, 207
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 4 cut(s) 38, 96, 148, 166
ScrFI CCNGG 1 cut(s) 265
SetI ASST 3 cut(s) 147, 165, 207
SfaNI GCATC 1 cut(s) 181
Sse9I AATT 1 cut(s) 8
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 263
TaqI TCGA 1 cut(s) 101
TasI AATT 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 20, 123, 238
Van91I CCANNNNNTGG 1 cut(s) 217
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.