Rh3AG278200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000224
Physical Location & Seq
Reverse (-)
32276376 .. 32301045
24670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG278200.1

Sequence Viewer

Length: 348 bp
ATGGAGAAACGTCTTCGTTCGAACGTTTCCGGTGCCCAAAAGGCTAATGTTGGTGTCACTGTGACAAAACGGCGACGTGTACAAGCAAATGAACCTTCACTTCCAAATTCTTTGCAAGATGAACTCGATGTTCCTGATATGCCTATCTCTAATAGAACTACCCAAAAGGCTATTGCTAGTACCATTATCCAAAGGCCTAATGTTGCGATTATTGACTCATGTAAAAGTGGCATTGCTTTAGATGGTGGCCAACTCCTTACAAACTCGCTTGATTATATATGGCGAGAATTGCATGACAGATTTTCACGTTCAAACATCTTTCTTGTGGAAAAAGTAAATGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.76

Weight (kDa)

9.64

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AclI AACGTT 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 2 cut(s) 81, 181
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 1 cut(s) 312
AjiI CACGTC 1 cut(s) 77
AoxI GGCC 2 cut(s) 194, 247
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 86
BfaI CTAG 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmgBI CACGTC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 2 cut(s) 196, 249
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 30
BsnI GGCC 2 cut(s) 196, 249
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 79
BspANI GGCC 2 cut(s) 196, 249
BspLI GGNNCC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 20
BstMWI GCNNNNNNNGC 2 cut(s) 41, 289
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 5
BsuRI GGCC 2 cut(s) 196, 249
BtrI CACGTC 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 57
Csp6I GTAC 2 cut(s) 80, 180
CviAII CATG 3 cut(s) 219, 293, 345
CviJI RGCY 4 cut(s) 44, 170, 196, 249
CviKI_1 RGCY 4 cut(s) 44, 170, 196, 249
CviQI GTAC 2 cut(s) 80, 180
EaeI YGGCCR 1 cut(s) 247
Eco147I AGGCCT 1 cut(s) 196
FaeI CATG 3 cut(s) 222, 296, 348
FaiI YATR 7 cut(s) 140, 220, 276, 278, 280, 294, 346
FatI CATG 3 cut(s) 218, 292, 344
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 177
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 196, 249
HapII CCGG 1 cut(s) 30
Hin1II CATG 3 cut(s) 222, 296, 348
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 4 cut(s) 10, 24, 76, 307
HpyCH4V TGCA 3 cut(s) 115, 292, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 289
HpySE526I ACGT 4 cut(s) 10, 24, 76, 307
Hsp92II CATG 3 cut(s) 222, 296, 348
LpnPI CCDG 2 cut(s) 43, 147
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 1 cut(s) 177
MaeII ACGT 4 cut(s) 10, 24, 76, 307
MaeIII GTNAC 2 cut(s) 55, 61
MboII GAAGA 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 2 cut(s) 106, 287
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 209
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 41, 289
NlaIII CATG 3 cut(s) 222, 296, 348
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 2 cut(s) 55, 61
NspV TTCGAA 1 cut(s) 20
PceI AGGCCT 1 cut(s) 196
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp1406I AACGTT 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 34
RsaI GTAC 2 cut(s) 81, 181
RsaNI GTAC 2 cut(s) 80, 180
SatI GCNGC 1 cut(s) 342
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 37
SetI ASST 5 cut(s) 13, 27, 79, 97, 310
SfuI TTCGAA 1 cut(s) 20
Sse9I AATT 2 cut(s) 106, 287
SseBI AGGCCT 1 cut(s) 196
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 196
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 4 cut(s) 13, 27, 79, 310
TaqI TCGA 2 cut(s) 20, 126
TasI AATT 2 cut(s) 106, 287
TatI WGTACW 1 cut(s) 79
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 2 cut(s) 55, 61
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 2 cut(s) 55, 61
TspDTI ATGAA 2 cut(s) 105, 135
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 106
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.