RchiOBHm_Chr3g0476041

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000224
Physical Location & Seq
Forward (+)
21988639 .. 21989236
598 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44149

Sequence Viewer

Length: 294 bp
ATGATGCTAGGACATCAGTCGATATCCAAGGATCTACTACAGAAGGTCCAGAAAAAAAAAGTGCGTGGAAAGACAAGAGGTTTAAATGCTGATAAGGTGCATGAGCAGCTTGGTACTAAAATACCTGTGACTTTCAAGAAAGAAAATGGCAGACCCACAGGTCCATATGCGGAAATGTTTGCTAATGAAATTGGATTCACCTTTCGGAACCATGCACCTCTAAATGTGAAAAAATGGAAGGAAGTAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACTGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

97

Amino Acids

11.13

Weight (kDa)

10.33

Isoelectric Point (pI)

23.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 159
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 39
AfaI GTAC 1 cut(s) 115
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AlwI GGATC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 46, 161
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 2 cut(s) 46, 161
BbvI GCAGC 1 cut(s) 118
BclI TGATCA 1 cut(s) 270
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme18I GGWCC 2 cut(s) 46, 161
BmgT120I GGNCC 2 cut(s) 46, 161
BmiI GGNNCC 1 cut(s) 209
BoxI GACNNNNGTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 31, 270
BspACI CCGC 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 31, 270
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 286
BstKTI GATC 2 cut(s) 34, 273
BstMBI GATC 2 cut(s) 31, 270
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstPAI GACNNNNGTC 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 46, 161
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 101, 212
CviJI RGCY 1 cut(s) 109
CviKI_1 RGCY 1 cut(s) 109
CviQI GTAC 1 cut(s) 114
DpnI GATC 2 cut(s) 33, 272
DpnII GATC 2 cut(s) 31, 270
DraI TTTAAA 1 cut(s) 84
DrdI GACNNNNNNGTC 1 cut(s) 159
DseDI GACNNNNNNGTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 27
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 46, 161
EcoRV GATATC 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 104, 215
FaiI YATR 4 cut(s) 102, 166, 168, 213
FatI CATG 2 cut(s) 100, 211
FauNDI CATATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 104, 215
HinfI GANTC 1 cut(s) 195
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 49, 136
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 37, 232
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 100, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 2 cut(s) 104, 215
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 2 cut(s) 31, 270
LpnPI CCDG 4 cut(s) 62, 138, 144, 264
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 33, 272
MboI GATC 2 cut(s) 31, 270
MboII GAAGA 1 cut(s) 266
MflI RGATCY 1 cut(s) 31
MluCI AATT 1 cut(s) 189
MnlI CCTC 2 cut(s) 71, 228
MseI TTAA 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeI CATATG 1 cut(s) 166
NdeII GATC 2 cut(s) 31, 270
NlaIII CATG 2 cut(s) 104, 215
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 108
PshAI GACNNNNGTC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 2 cut(s) 46, 161
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 31, 270
Sau96I GGNCC 2 cut(s) 46, 161
SetI ASST 8 cut(s) 48, 82, 99, 111, 127, 163, 203, 220
SfcI CTRYAG 1 cut(s) 38
SinI GGWCC 2 cut(s) 46, 161
Sse9I AATT 1 cut(s) 189
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 189
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 46, 161
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.