Rh1CG196300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000224
Physical Location & Seq
Reverse (-)
42950053 .. 42956418
6366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG196300.1

Sequence Viewer

Length: 309 bp
ATGTCATTGAATTCTTTGAAATGTTTGACGGATGCAGATGGTTACAAAATGTCGAAACGTCTTCGTTCTAACGTTTCCGGTGCCCAAAAGGCTAATGTTGACAAGCGATTTAGAGGACTCTTCGGCCGAAAAGAGAGAGTTAAGAAGGCCGTGGGCAACAAGATAAAGCTGAAATGGAGTTGCAAATTGCAACCAAAGAAATTGGTGTTGCCTCAGGAGTCTAGGATTTCTAAGAATGGAGCCCACTTAGTCCCATACAATGTGAACGTGATGAAGGCAGTTCAACTCTTATGGGCTGGTAGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.46

Weight (kDa)

10.66

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AclI AACGTT 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 1 cut(s) 304
AgsI TTSAA 3 cut(s) 10, 19, 284
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 2 cut(s) 124, 147
ApoI RAATTY 1 cut(s) 10
AxyI CCTNAGG 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 134
BfaI CTAG 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 82, 241
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 77
Bse21I CCTNAGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 85
BseX3I CGGCCG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 126, 149
BshNI GGYRCC 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 126, 149
Bsp1286I GDGCHC 2 cut(s) 85, 244
BspANI GGCC 2 cut(s) 126, 149
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 82, 241
BspT107I GGYRCC 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 213, 231, 247
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 37
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 85
BstSNI TACGTA 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 53
BstZI CGGCCG 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 126, 149
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 37
Csp6I GTAC 1 cut(s) 303
CviJI RGCY 6 cut(s) 92, 126, 149, 169, 242, 296
CviKI_1 RGCY 6 cut(s) 92, 126, 149, 169, 242, 296
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 3 cut(s) 213, 231, 247
EaeI YGGCCR 1 cut(s) 124
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 124
Eco105I TACGTA 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 244
FaiI YATR 2 cut(s) 256, 292
FaqI GGGAC 1 cut(s) 236
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 244
FspBI CTAG 1 cut(s) 222
HaeIII GGCC 2 cut(s) 126, 149
HapII CCGG 1 cut(s) 78
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 2 cut(s) 117, 218
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 2 cut(s) 100, 265
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 100, 265
HpyAV CCTTC 2 cut(s) 139, 268
HpyCH4IV ACGT 4 cut(s) 58, 72, 267, 305
HpyCH4V TGCA 3 cut(s) 35, 183, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 213, 231, 247
HpySE526I ACGT 4 cut(s) 58, 72, 267, 305
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 3 cut(s) 91, 200, 282
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 222
MaeII ACGT 4 cut(s) 58, 72, 267, 305
MaeIII GTNAC 1 cut(s) 41
MboII GAAGA 2 cut(s) 53, 112
MhlI GDGCHC 2 cut(s) 85, 244
MluCI AATT 3 cut(s) 10, 185, 200
MlyI GAGTC 2 cut(s) 111, 227
MnlI CCTC 2 cut(s) 107, 222
MseI TTAA 1 cut(s) 141
MspI CCGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIV GGNNCC 2 cut(s) 82, 241
PleI GAGTC 2 cut(s) 111, 226
PpsI GAGTC 2 cut(s) 111, 226
Ppu21I YACGTR 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 82, 241
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 141
SchI GAGTC 2 cut(s) 111, 227
SduI GDGCHC 2 cut(s) 85, 244
SetI ASST 5 cut(s) 61, 75, 171, 270, 308
SfaNI GCATC 1 cut(s) 22
SgeI CNNG 7 cut(s) 90, 115, 163, 172, 227, 234, 280
SnaBI TACGTA 1 cut(s) 306
Sse9I AATT 3 cut(s) 10, 185, 200
SspMI CTAG 1 cut(s) 222
TaiI ACGT 4 cut(s) 61, 75, 270, 308
TaqI TCGA 1 cut(s) 53
TasI AATT 3 cut(s) 10, 185, 200
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 44
XapI RAATTY 1 cut(s) 10
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.