Rorug01G0118400

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000224
Physical Location & Seq
Forward (+)
20742101 .. 20744365
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0118400.1

Sequence Viewer

Length: 642 bp
ATGACCTGGCTCTCTCGGAATGAGATTGGAAGGCTGAATCTTCTCAGAGACGTCTCACCAGGGTGGACTCCTCTACAAACCACCATCCGTTGCTGTGATCATGGCTGGAGGGCTGTTGAAGATATTGATCTGAGCATGATGATCTCAGAATTTTCGGGGGTTTCCGACACCCAAGAGATTACAGTGATCATGGCTAGAGGACTGTTGAAGATATCTAAGATTATTTTATGTATTTGGGCACTACCTAAGATTAGTACGGTGCTTCAAGACTTGGTTGCTTTCAATTCTGTAAAGCATCATATATCGAGTGAGAAACCAATCAAGGAGAAGACATGCTATTACTTTATTTTTGAAGAGGATCCAAGCGATTTTAAGTTTCAGAGCTTGCATTGGTGTATCTCAGGATTGTTACATTTCATTTGGGTTGGCAGGATGATTGCTGGTTCTCATAACCTGAATATTTTCTTTTCAGTTATTGAAGCAAAATTTAAATTACTTTTGCCTGATCTGTTCAACAAGGCTCTTCACCATACTGGTTTTGGTTCTATCAGCTCATTGTTTTCCACTGAAGGTGTTTTAGGAATTTCTAAACAAGTAGCTGCAAGGTTAAGAAAGCTCCTAGCTGGGCGGAAGTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

213

Amino Acids

24.18

Weight (kDa)

9.15

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
AciI CCGC 1 cut(s) 628
AclWI GGATC 2 cut(s) 353, 366
AcsI RAATTY 3 cut(s) 149, 485, 582
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 8 cut(s) 119, 208, 266, 283, 353, 479, 514, 637
AjnI CCWGG 2 cut(s) 5, 58
AleI CACNNNNGTG 1 cut(s) 61
AluBI AGCT 5 cut(s) 384, 552, 599, 616, 623
AluI AGCT 5 cut(s) 384, 552, 599, 616, 623
Alw26I GTCTC 2 cut(s) 42, 58
AlwI GGATC 2 cut(s) 353, 366
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 3 cut(s) 149, 485, 582
Asp700I GAANNNNTTC 1 cut(s) 461
AsuHPI GGTGA 2 cut(s) 48, 518
BaeGI GKGCMC 1 cut(s) 241
BamHI GGATCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 586
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 2 cut(s) 7, 60
BclI TGATCA 2 cut(s) 97, 186
BcoDI GTCTC 2 cut(s) 42, 58
BfaI CTAG 2 cut(s) 195, 620
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
Bme1390I CCNGG 2 cut(s) 7, 60
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 7, 60
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 538
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 2 cut(s) 7, 60
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 2 cut(s) 84, 438
BseJI GATNNNNATC 1 cut(s) 126
BseMII CTCAG 4 cut(s) 58, 122, 159, 414
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 1 cut(s) 586
BseYI CCCAGC 1 cut(s) 623
BsmAI GTCTC 2 cut(s) 42, 58
BsmBI CGTCTC 2 cut(s) 42, 58
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 6 cut(s) 97, 127, 141, 186, 358, 505
BspACI CCGC 1 cut(s) 628
BspCNI CTCAG 4 cut(s) 57, 123, 158, 413
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 2 cut(s) 353, 366
BspQI GCTCTTC 1 cut(s) 528
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 6 cut(s) 97, 127, 141, 186, 358, 505
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 7, 60
Bst4CI ACNGT 3 cut(s) 184, 204, 259
Bst6I CTCTTC 2 cut(s) 348, 528
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 6 cut(s) 44, 131, 145, 216, 246, 400
BstF5I GGATG 2 cut(s) 84, 438
BstKTI GATC 6 cut(s) 100, 130, 144, 189, 361, 508
BstMAI GTCTC 2 cut(s) 42, 58
BstMBI GATC 6 cut(s) 97, 127, 141, 186, 358, 505
BstNI CCWGG 2 cut(s) 7, 60
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 5, 58
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 586
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BtsCI GGATG 2 cut(s) 84, 438
BtsIMutI CAGTG 2 cut(s) 189, 564
Cac8I GCNNGC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 255
CviAII CATG 4 cut(s) 101, 136, 190, 333
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 6 cut(s) 44, 131, 145, 216, 246, 400
DpnI GATC 6 cut(s) 99, 129, 143, 188, 360, 507
DpnII GATC 6 cut(s) 97, 127, 141, 186, 358, 505
DraI TTTAAA 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 348, 528
EarI CTCTTC 2 cut(s) 348, 528
Eco32I GATATC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 588
EcoRII CCWGG 2 cut(s) 5, 58
EcoRV GATATC 1 cut(s) 213
Esp3I CGTCTC 2 cut(s) 42, 58
FaeI CATG 4 cut(s) 104, 139, 193, 336
FaiI YATR 9 cut(s) 102, 137, 191, 229, 300, 302, 334, 450, 531
FatI CATG 4 cut(s) 100, 135, 189, 332
FbaI TGATCA 2 cut(s) 97, 186
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 2 cut(s) 71, 445
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 2 cut(s) 195, 620
GluI GCNGC 1 cut(s) 600
GsaI CCCAGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 4 cut(s) 104, 139, 193, 336
HinfI GANTC 2 cut(s) 37, 67
HphI GGTGA 2 cut(s) 48, 518
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 6 cut(s) 18, 47, 132, 148, 166, 381
Hpy188III TCNNGA 2 cut(s) 266, 402
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 24, 563
HpyCH4III ACNGT 3 cut(s) 184, 204, 259
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 388, 602
HpyF3I CTNAG 6 cut(s) 44, 131, 145, 216, 246, 400
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 4 cut(s) 104, 139, 193, 336
Ksp22I TGATCA 2 cut(s) 97, 186
Kzo9I GATC 6 cut(s) 97, 127, 141, 186, 358, 505
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 621
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 1 cut(s) 304
MaeI CTAG 2 cut(s) 195, 620
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 408
MalI GATC 6 cut(s) 99, 129, 143, 188, 360, 507
MboI GATC 6 cut(s) 97, 127, 141, 186, 358, 505
MboII GAAGA 6 cut(s) 32, 131, 220, 340, 365, 515
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 5 cut(s) 149, 283, 485, 491, 582
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 4 cut(s) 81, 102, 191, 349
MroXI GAANNNNTTC 1 cut(s) 461
MseI TTAA 3 cut(s) 372, 489, 608
MslI CAYNNNNRTG 1 cut(s) 61
MspR9I CCNGG 2 cut(s) 7, 60
MvaI CCWGG 2 cut(s) 7, 60
NdeII GATC 6 cut(s) 97, 127, 141, 186, 358, 505
NlaIII CATG 4 cut(s) 104, 139, 193, 336
NlaIV GGNNCC 1 cut(s) 360
NspI RCATGY 1 cut(s) 336
OliI CACNNNNGTG 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 601
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 5, 58
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 2 cut(s) 5, 58
PspN4I GGNNCC 1 cut(s) 360
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 372, 489, 608
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 6 cut(s) 97, 127, 141, 186, 358, 505
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 7, 60
SduI GDGCHC 1 cut(s) 241
SfaNI GCATC 1 cut(s) 304
SmiI ATTTAAAT 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 61
Sse9I AATT 5 cut(s) 149, 283, 485, 491, 582
SsiI CCGC 1 cut(s) 628
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 195, 620
StyD4I CCNGG 2 cut(s) 5, 58
SwaI ATTTAAAT 1 cut(s) 490
TaaI ACNGT 3 cut(s) 184, 204, 259
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 305
TasI AATT 5 cut(s) 149, 283, 485, 491, 582
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 3 cut(s) 372, 489, 608
Tru9I TTAA 3 cut(s) 372, 489, 608
TscAI CASTG 2 cut(s) 189, 571
TseI GCWGC 1 cut(s) 599
TspDTI ATGAA 1 cut(s) 406
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 2 cut(s) 189, 571
XapI RAATTY 3 cut(s) 149, 485, 582
XceI RCATGY 1 cut(s) 336
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 461
XspI CTAG 2 cut(s) 195, 620
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.