Rroxscaffold_1G00024490

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000224
Physical Location & Seq
Forward (+)
30399790 .. 30404869
5080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024490.1

Sequence Viewer

Length: 807 bp
ATGGGTCGCCTCCTGCTCCTCTCGGCCGTCTCCGTGGTGGTCTCCGTCGACGATTCTTACCCACGGCGGCGCTGCAAGTCTGCACAGTTTGAGGAAACACGACCCGGCCGGAAAACACAGCTCCAATGCTCGCAAGGCTTCGATTTTTCTTGGTTAAGCTCGAATTGCCTCGCCGATCGATCCATGGGGTTAGAAGAATCGAGCAGAGATCGTGCGGATCGGAGTGCTGTTGGATTATGTAGTGCAATGAGTAAACGCTCTCCTATGCAAACTACTGATCAGCCATACAAAAATTATGTAGAAGATGGACTCAATTCTGCTATTGGTACCACTACAGAACGAACTACTACGGCAGCACAGACCGGAGAGAAGCAAGGTGCAATTGATCGCTTTGAAACAGAGTACAAAAGCACTAAAAAAGGTTGGGACTTGAGAGCAAAAGCAAAGTGGGATGAAATGATTAAGATGCGAACTGAGACAACTCAACCTGATGGAACTCGGACAATGACAGATGTTGAAATTTGTTCAAAAGTCCTTGGAGTCAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCCTAGACCTCCACCATCAATGGTCTCTCATTCGTCGATAAATGAAATGTTTGAAAAGAACAAAGAGTTGCAAAAACAGCTTCAAGAGACCCAACACCTTGTAGGGACTCAACAACAAAAGATTAATGCACAAAATGAGCTGATCCAAAGATTGGAGGAGCAAGCCAAAAAGTTTGAGGAGTTCATGGCTAACTTTTCCAGGCAACATCCATCAAGTTACTATCTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

268

Amino Acids

30.38

Weight (kDa)

8.8

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 727
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 67, 215
AclWI GGATC 3 cut(s) 174, 225, 712
AcoI YGGCCR 2 cut(s) 24, 106
AcsI RAATTY 1 cut(s) 519
AfaI GTAC 2 cut(s) 328, 404
AfiI CCNNNNNNNGG 1 cut(s) 727
AgsI TTSAA 5 cut(s) 395, 518, 528, 629, 659
AjnI CCWGG 1 cut(s) 773
AluBI AGCT 4 cut(s) 121, 159, 655, 715
AluI AGCT 4 cut(s) 121, 159, 655, 715
Alw26I GTCTC 5 cut(s) 34, 46, 470, 604, 656
AlwI GGATC 3 cut(s) 174, 225, 712
AoxI GGCC 3 cut(s) 24, 106, 574
ApeKI GCWGC 2 cut(s) 72, 353
ApoI RAATTY 1 cut(s) 519
AseI ATTAAT 1 cut(s) 699
Asp718I GGTACC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 575
AsuC2I CCSGG 1 cut(s) 105
BanI GGYRCC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 59, 365
BccI CCATC 4 cut(s) 299, 485, 598, 793
BceAI ACGGC 3 cut(s) 11, 80, 366
BciT130I CCWGG 1 cut(s) 775
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 5 cut(s) 34, 46, 470, 604, 656
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 3 cut(s) 68, 73, 354
BlsI GCNGC 3 cut(s) 69, 74, 355
Bme1390I CCNGG 2 cut(s) 105, 775
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 2 cut(s) 105, 775
BmsI GCATC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 178
BsaI GGTCTC 3 cut(s) 46, 604, 656
BsaJI CCNNGG 4 cut(s) 33, 62, 183, 535
BsaWI WCCGGW 1 cut(s) 362
Bsc4I CCNNNNNNNGG 1 cut(s) 727
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 775
BseCI ATCGAT 1 cut(s) 178
BseDI CCNNGG 4 cut(s) 33, 62, 183, 535
BseGI GGATG 2 cut(s) 457, 781
BseLI CCNNNNNNNGG 1 cut(s) 727
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 465
BseRI GAGGAG 3 cut(s) 8, 746, 767
BseX3I CGGCCG 2 cut(s) 24, 106
BseXI GCAGC 2 cut(s) 59, 365
BsgI GTGCAG 1 cut(s) 66
Bsh1285I CGRYCG 3 cut(s) 27, 109, 178
BshFI GGCC 3 cut(s) 26, 108, 576
BshNI GGYRCC 1 cut(s) 326
BshVI ATCGAT 1 cut(s) 178
BsiEI CGRYCG 3 cut(s) 27, 109, 178
BsiSI CCGG 3 cut(s) 105, 109, 363
BslFI GGGAC 2 cut(s) 440, 694
BslI CCNNNNNNNGG 1 cut(s) 727
BsmAI GTCTC 5 cut(s) 34, 46, 470, 604, 656
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 440, 694
BsnI GGCC 3 cut(s) 26, 108, 576
Bso31I GGTCTC 3 cut(s) 46, 604, 656
Bsp143I GATC 7 cut(s) 175, 179, 208, 217, 277, 385, 717
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 2 cut(s) 67, 215
BspANI GGCC 3 cut(s) 26, 108, 576
BspCNI CTCAG 1 cut(s) 466
BspDI ATCGAT 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 3 cut(s) 174, 225, 712
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 3 cut(s) 46, 604, 656
BsrDI GCAATG 1 cut(s) 252
BssECI CCNNGG 4 cut(s) 33, 62, 183, 535
BssMI GATC 7 cut(s) 175, 179, 208, 217, 277, 385, 717
BssT1I CCWWGG 2 cut(s) 183, 535
Bst2UI CCWGG 1 cut(s) 775
Bst4CI ACNGT 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 131, 738
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 3 cut(s) 33, 62, 183
BstF5I GGATG 2 cut(s) 457, 781
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 7 cut(s) 178, 182, 211, 220, 280, 388, 720
BstMAI GTCTC 5 cut(s) 34, 46, 470, 604, 656
BstMBI GATC 7 cut(s) 175, 179, 208, 217, 277, 385, 717
BstMCI CGRYCG 3 cut(s) 27, 109, 178
BstMWI GCNNNNNNNGC 3 cut(s) 135, 165, 652
BstNI CCWGG 1 cut(s) 775
BstSCI CCNGG 2 cut(s) 103, 773
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 59, 365
BstZI CGGCCG 2 cut(s) 24, 106
Bsu15I ATCGAT 1 cut(s) 178
BsuRI GGCC 3 cut(s) 26, 108, 576
BsuTUI ATCGAT 1 cut(s) 178
BtgI CCRYGG 3 cut(s) 33, 62, 183
BtsCI GGATG 2 cut(s) 457, 781
Cac8I GCNNGC 2 cut(s) 131, 738
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 575
ClaI ATCGAT 1 cut(s) 178
Csp6I GTAC 2 cut(s) 327, 403
CspCI CAANNNNNGTGG 2 cut(s) 547, 582
CviAII CATG 2 cut(s) 184, 760
CviQI GTAC 2 cut(s) 327, 403
DdeI CTNAG 1 cut(s) 474
DpnI GATC 7 cut(s) 177, 181, 210, 219, 279, 387, 719
DpnII GATC 7 cut(s) 175, 179, 208, 217, 277, 385, 717
EaeI YGGCCR 2 cut(s) 24, 106
EagI CGGCCG 2 cut(s) 24, 106
EclXI CGGCCG 2 cut(s) 24, 106
Eco130I CCWWGG 2 cut(s) 183, 535
Eco31I GGTCTC 3 cut(s) 46, 604, 656
Eco52I CGGCCG 2 cut(s) 24, 106
EcoRII CCWGG 1 cut(s) 773
EcoT14I CCWWGG 2 cut(s) 183, 535
ErhI CCWWGG 2 cut(s) 183, 535
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 2 cut(s) 187, 763
FaiI YATR 6 cut(s) 185, 238, 266, 286, 297, 761
FaqI GGGAC 2 cut(s) 440, 694
FatI CATG 2 cut(s) 183, 759
FbaI TGATCA 1 cut(s) 277
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 68, 73, 354
FokI GGATG 2 cut(s) 464, 768
Fsp4HI GCNGC 3 cut(s) 68, 73, 354
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 68, 73, 354
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 3 cut(s) 26, 108, 576
HapII CCGG 3 cut(s) 105, 109, 363
HhaI GCGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 187, 763
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 5 cut(s) 53, 197, 309, 540, 682
HpaII CCGG 3 cut(s) 105, 109, 363
Hpy166II GTNNAC 2 cut(s) 49, 254
Hpy188I TCNGA 2 cut(s) 222, 501
Hpy188III TCNNGA 1 cut(s) 659
Hpy8I GTNNAC 2 cut(s) 49, 254
Hpy99I CGWCG 3 cut(s) 50, 53, 613
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 7 cut(s) 75, 83, 245, 268, 380, 646, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 165, 652
HpyF3I CTNAG 1 cut(s) 474
Hsp92II CATG 2 cut(s) 187, 763
HspAI GCGC 1 cut(s) 70
KpnI GGTACC 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 7 cut(s) 175, 179, 208, 217, 277, 385, 717
LmnI GCTCC 3 cut(s) 21, 126, 733
LpnPI CCDG 8 cut(s) 26, 118, 122, 376, 501, 534, 760, 787
Lsp1109I GCAGC 2 cut(s) 59, 365
LweI GCATC 1 cut(s) 456
MaeI CTAG 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 791
MalI GATC 7 cut(s) 177, 181, 210, 219, 279, 387, 719
MboI GATC 7 cut(s) 175, 179, 208, 217, 277, 385, 717
MboII GAAGA 2 cut(s) 206, 314
MfeI CAATTG 1 cut(s) 381
MluCI AATT 5 cut(s) 163, 292, 313, 381, 519
MlyI GAGTC 3 cut(s) 303, 549, 676
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 7 cut(s) 20, 29, 85, 179, 594, 724, 745
MseI TTAA 3 cut(s) 155, 462, 699
MspI CCGG 3 cut(s) 105, 109, 363
MspR9I CCNGG 2 cut(s) 105, 775
MunI CAATTG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 775
MwoI GCNNNNNNNGC 3 cut(s) 135, 165, 652
NciI CCSGG 1 cut(s) 105
NcoI CCATGG 1 cut(s) 183
NdeII GATC 7 cut(s) 175, 179, 208, 217, 277, 385, 717
NlaIII CATG 2 cut(s) 187, 763
NlaIV GGNNCC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 53, 197
PflMI CCANNNNNTGG 1 cut(s) 727
PkrI GCNGC 3 cut(s) 69, 74, 355
Ple19I CGATCG 1 cut(s) 178
PleI GAGTC 3 cut(s) 303, 548, 676
PpsI GAGTC 3 cut(s) 303, 548, 676
PshBI ATTAAT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 773
PspGI CCWGG 1 cut(s) 773
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 575
PvuI CGATCG 1 cut(s) 178
RsaI GTAC 2 cut(s) 328, 404
RsaNI GTAC 2 cut(s) 327, 403
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 3 cut(s) 155, 462, 699
SatI GCNGC 3 cut(s) 68, 73, 354
Sau3AI GATC 7 cut(s) 175, 179, 208, 217, 277, 385, 717
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 3 cut(s) 303, 549, 676
ScrFI CCNGG 2 cut(s) 105, 775
SetI ASST 9 cut(s) 123, 161, 379, 424, 490, 586, 657, 675, 717
SfaNI GCATC 1 cut(s) 456
SfcI CTRYAG 1 cut(s) 333
SgrDI CGTCGACG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 5 cut(s) 163, 292, 313, 381, 519
SsiI CCGC 2 cut(s) 67, 215
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 103, 773
StyI CCWWGG 2 cut(s) 183, 535
TaaI ACNGT 1 cut(s) 87
TaqI TCGA 6 cut(s) 48, 141, 161, 178, 200, 611
TasI AATT 5 cut(s) 163, 292, 313, 381, 519
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 2 cut(s) 53, 197
Tru1I TTAA 3 cut(s) 155, 462, 699
Tru9I TTAA 3 cut(s) 155, 462, 699
TseI GCWGC 2 cut(s) 72, 353
TspDTI ATGAA 3 cut(s) 468, 633, 748
TspGWI ACGGA 2 cut(s) 22, 34
Van91I CCANNNNNTGG 1 cut(s) 727
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.