Rorug06G0408700

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000224
Physical Location & Seq
Forward (+)
55145845 .. 55147849
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0408700.1

Sequence Viewer

Length: 558 bp
ATGATCAGGTTATTCAAAGTGAAGGAAAAGCAACAGGAAGTTGTAGACAATGCAAAGGAGAAGGGACCAGTCAAGAAGCAAAGTGCAGGGGAATTACGTGTTCAAAGAGATATAACTGAGTTGAACCTGCCAAATTCAATTAGCATAGCATTCCCCAATGGACAAGATGATCTGATGAACTTTGAGGTCACCATTGAACCTGATGAAGGGTACTATAACGGTGGCAGGTTTCTCTTCACATTTGAAGTTACCCCAGTCTATCCTCATGAAGCACCAAAGGTCAAGTGCGAAACAAAGGTCTATCATCCAAACATCGACTTGGAAGGGAATATCTGCCTTAACATTCTTCGTGAAGATTGGAAACCTGTCCTCAATATAAGTACTGTTATTTATGGATTGTATTACCTATTCACGCAACCAAATTATGAAGATCCTTTGAATCATGAGGCAGCTGATGTTTTGAGGGATAATCCAGAGACGTTCGAATCAAATGTGAAAAGGGCAATTGCTGGTGATCAATGGATTGGAAGTACCTATTTCCCTAAACCGGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

185

Amino Acids

21.3

Weight (kDa)

4.88

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 33 - 167 8.9e-40 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 135, 216
AccI GTMKAC 1 cut(s) 45
AclWI GGATC 1 cut(s) 425
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 3 cut(s) 212, 382, 532
AfiI CCNNNNNNNGG 2 cut(s) 206, 547
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 7 cut(s) 16, 104, 124, 138, 197, 245, 439
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 133
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 181, 524
AsuII TTCGAA 1 cut(s) 483
AvaII GGWCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 461
BclI TGATCA 2 cut(s) 3, 514
BcoDI GTCTC 1 cut(s) 470
BfuAI ACCTGC 2 cut(s) 135, 216
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
BmcAI AGTACT 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 547
Bse1I ACTGG 2 cut(s) 68, 254
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 206, 547
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 68, 254
BseXI GCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 206, 547
BsmAI GTCTC 1 cut(s) 470
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 483
Bsp143I GATC 4 cut(s) 3, 169, 430, 514
BspCNI CTCAG 1 cut(s) 109
BspHI TCATGA 2 cut(s) 265, 442
BspLI GGNNCC 1 cut(s) 66
BspMI ACCTGC 2 cut(s) 135, 216
BspPI GGATC 1 cut(s) 425
BspT104I TTCGAA 1 cut(s) 483
BsrI ACTGG 2 cut(s) 68, 254
BssMI GATC 4 cut(s) 3, 169, 430, 514
Bst4CI ACNGT 2 cut(s) 221, 385
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 98
BstBI TTCGAA 1 cut(s) 483
BstDEI CTNAG 1 cut(s) 117
BstEII GGTNACC 1 cut(s) 187
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 4 cut(s) 6, 172, 433, 517
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 4 cut(s) 3, 169, 430, 514
BstPI GGTNACC 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BtsCI GGATG 1 cut(s) 304
BveI ACCTGC 2 cut(s) 135, 216
CciI TCATGA 2 cut(s) 265, 442
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 211, 381, 531
CviAII CATG 2 cut(s) 266, 443
CviJI RGCY 1 cut(s) 452
CviKI_1 RGCY 1 cut(s) 452
CviQI GTAC 3 cut(s) 211, 381, 531
DdeI CTNAG 1 cut(s) 117
DpnI GATC 4 cut(s) 5, 171, 432, 516
DpnII GATC 4 cut(s) 3, 169, 430, 514
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoO65I GGTNACC 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 2 cut(s) 269, 446
FaiI YATR 8 cut(s) 113, 146, 216, 267, 377, 393, 426, 444
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 265, 442
FbaI TGATCA 2 cut(s) 3, 514
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 450
HapII CCGG 1 cut(s) 548
Hin1II CATG 2 cut(s) 269, 446
HinfI GANTC 2 cut(s) 439, 485
HpaII CCGG 1 cut(s) 548
HphI GGTGA 2 cut(s) 181, 524
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 5 cut(s) 73, 266, 350, 443, 473
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 4 cut(s) 16, 55, 200, 317
HpyCH4III ACNGT 2 cut(s) 221, 385
HpyCH4IV ACGT 2 cut(s) 97, 479
HpyCH4V TGCA 2 cut(s) 53, 86
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 97, 479
Hsp92II CATG 2 cut(s) 269, 446
Ksp22I TGATCA 2 cut(s) 3, 514
Kzo9I GATC 4 cut(s) 3, 169, 430, 514
Lsp1109I GCAGC 1 cut(s) 461
MaeII ACGT 2 cut(s) 97, 479
MaeIII GTNAC 2 cut(s) 187, 247
MalI GATC 4 cut(s) 5, 171, 432, 516
MboI GATC 4 cut(s) 3, 169, 430, 514
MboII GAAGA 4 cut(s) 226, 338, 365, 440
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 1 cut(s) 430
MluCI AATT 5 cut(s) 92, 133, 138, 421, 504
MnlI CCTC 5 cut(s) 178, 273, 380, 439, 456
MseI TTAA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 548
MunI CAATTG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 149
NdeII GATC 4 cut(s) 3, 169, 430, 514
NlaIII CATG 2 cut(s) 269, 446
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 187
NspV TTCGAA 1 cut(s) 483
PagI TCATGA 2 cut(s) 265, 442
PctI GAATGC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 439, 485
PkrI GCNGC 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 98
PspEI GGTNACC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 212, 382, 532
RsaNI GTAC 3 cut(s) 211, 381, 531
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 4 cut(s) 3, 169, 430, 514
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 483
SinI GGWCC 1 cut(s) 65
Sse9I AATT 5 cut(s) 92, 133, 138, 421, 504
TaaI ACNGT 2 cut(s) 221, 385
TaiI ACGT 2 cut(s) 100, 482
TaqI TCGA 2 cut(s) 315, 483
TasI AATT 5 cut(s) 92, 133, 138, 421, 504
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 2 cut(s) 439, 485
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 191, 219, 282, 441
VpaK11BI GGWCC 1 cut(s) 65
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.