Rh5BG543100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000224
Physical Location & Seq
Forward (+)
86382532 .. 86431784
49253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG543100.1

Sequence Viewer

Length: 402 bp
ATGTTGAAACGTCTTCGTTCGAACATTTCCGGTGCCCAAAAGGCTAATGTTGGTGTCACTTTGACAAAACGGCGACATGTACAAGCAAATGAACCTTCACTTCCAAATTCTTTGCAAGATGAACTTGATGTTCCTGATATGCCTACCTCTAATAGAACTACCCAAAGGGCTATTGCTAGTACCATTATCCAAAGGCCTACTGTTGACGGCGCTGCATTTCCACTGGAGAACTTTATATATGCAAGTGACTTTATGCAAAACAGCCAGAACAGAAGAGAACTTTCAGCAACCCAGACACGGACACTATTCTCAGAAAATGAAAAACCAAAATCTTATGATAGGGAGGAACCACAAATCTTATATCATACTTTGGAAACCATTAGAAAGAACATCAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.19

Weight (kDa)

9.45

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 2 cut(s) 81, 181
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 1 cut(s) 7
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 106
AspLEI GCGC 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 199
BceAI ACGGC 2 cut(s) 86, 223
BfaI CTAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 213
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 34, 348
BpiI GAAGAC 1 cut(s) 5
BpmI CTGGAG 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 297
BsnI GGCC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 79
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 34, 348
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 310
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 5
BsuRI GGCC 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 221
CfoI GCGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 80, 180
CviAII CATG 1 cut(s) 77
CviJI RGCY 4 cut(s) 44, 170, 196, 264
CviKI_1 RGCY 4 cut(s) 44, 170, 196, 264
CviQI GTAC 2 cut(s) 80, 180
DdeI CTNAG 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 196
FaeI CATG 1 cut(s) 80
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 212
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 4 cut(s) 115, 215, 242, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 210
LpnPI CCDG 5 cut(s) 43, 147, 209, 278, 305
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 55, 245
MboII GAAGA 2 cut(s) 5, 285
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 1 cut(s) 106
MnlI CCTC 2 cut(s) 157, 337
MspI CCGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 2 cut(s) 34, 348
NmuCI GTSAC 2 cut(s) 55, 245
NspI RCATGY 1 cut(s) 80
NspV TTCGAA 1 cut(s) 20
PceI AGGCCT 1 cut(s) 196
PciI ACATGT 1 cut(s) 76
PkrI GCNGC 1 cut(s) 214
PscI ACATGT 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 34, 348
RsaI GTAC 2 cut(s) 81, 181
RsaNI GTAC 2 cut(s) 80, 180
SatI GCNGC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 37
SetI ASST 3 cut(s) 13, 97, 149
SfuI TTCGAA 1 cut(s) 20
Sse9I AATT 1 cut(s) 106
SseBI AGGCCT 1 cut(s) 196
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 196
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 106
TatI WGTACW 1 cut(s) 79
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 2 cut(s) 55, 245
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 2 cut(s) 55, 245
TspDTI ATGAA 3 cut(s) 105, 135, 333
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 106
XceI RCATGY 1 cut(s) 80
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.