Rh5CG566000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000224
Physical Location & Seq
Forward (+)
80087527 .. 80090645
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG566000.1

Sequence Viewer

Length: 393 bp
ATGTTCAAATTTTTAATTAGCTCAAAATTTGATTTGGATATCCAATGTAGTTGTAGTTTTGGCTCTTCTTGTAAGTCTTGCAAGTTAAACTTATTTTATTTCTCTTATAGTAACAGTGACAAAATGTTGAAACGTCTTCGTTCGAACATTTCCGGTGCCCAAAAGGCTAATGTTGGTGTCACTTTGACAAAACGGCGACATGTACAAGCAAATGAACCTTCACTTCCAAATTCTTTGCAAGATGAACTTGATGTTCCTGATATGCCTACCTCTAATAGAACTACCCAAAGGGCTATTGCTAGTACCATTATCCAAAGGCCTACTGTTGGTGACTCAATGAATGCACATGTTCAGTACCAAACTATTAACCAGCCTCTAACCAGCCATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.58

Weight (kDa)

9.39

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AcsI RAATTY 3 cut(s) 8, 26, 229
AfaI GTAC 3 cut(s) 204, 304, 356
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 2 cut(s) 199, 346
AgsI TTSAA 2 cut(s) 7, 130
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
AoxI GGCC 1 cut(s) 317
ApoI RAATTY 3 cut(s) 8, 26, 229
AsuHPI GGTGA 1 cut(s) 341
AsuII TTCGAA 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 209
BfaI CTAG 1 cut(s) 300
BglI GCCNNNNNGGC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 160
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 326
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 1 cut(s) 319
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 202
BspANI GGCC 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 70
BspT104I TTCGAA 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 116, 325
Bst6I CTCTTC 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNSI RCATGY 2 cut(s) 203, 350
BstSLI GKGCMC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 121
Csp6I GTAC 3 cut(s) 203, 303, 355
CviAII CATG 2 cut(s) 200, 347
CviJI RGCY 7 cut(s) 21, 63, 167, 293, 319, 373, 384
CviKI_1 RGCY 7 cut(s) 21, 63, 167, 293, 319, 373, 384
CviQI GTAC 3 cut(s) 203, 303, 355
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 319
Eco32I GATATC 1 cut(s) 40
EcoRV GATATC 1 cut(s) 40
FaeI CATG 2 cut(s) 203, 350
FaiI YATR 4 cut(s) 108, 201, 263, 348
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 231, 263
FatI CATG 2 cut(s) 199, 346
FspBI CTAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 153
Hin1II CATG 2 cut(s) 203, 350
HinfI GANTC 1 cut(s) 332
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 341
Hpy188III TCNNGA 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 2 cut(s) 116, 325
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 81, 238, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 2 cut(s) 203, 350
LguI GCTCTTC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 166, 270, 383
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 4 cut(s) 110, 116, 178, 329
MboII GAAGA 2 cut(s) 57, 128
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 4 cut(s) 8, 15, 26, 229
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 2 cut(s) 280, 384
MseI TTAA 3 cut(s) 14, 86, 366
MspI CCGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 164
NlaIII CATG 2 cut(s) 203, 350
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 3 cut(s) 116, 178, 329
NspI RCATGY 2 cut(s) 203, 350
NspV TTCGAA 1 cut(s) 143
PceI AGGCCT 1 cut(s) 319
PciI ACATGT 2 cut(s) 199, 346
PciSI GCTCTTC 1 cut(s) 70
PctI GAATGC 1 cut(s) 346
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PscI ACATGT 2 cut(s) 199, 346
PspN4I GGNNCC 1 cut(s) 157
RsaI GTAC 3 cut(s) 204, 304, 356
RsaNI GTAC 3 cut(s) 203, 303, 355
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 14, 86, 366
SchI GAGTC 1 cut(s) 326
SduI GDGCHC 1 cut(s) 160
SetI ASST 4 cut(s) 23, 136, 220, 272
SfuI TTCGAA 1 cut(s) 143
Sse9I AATT 4 cut(s) 8, 15, 26, 229
SseBI AGGCCT 1 cut(s) 319
SspMI CTAG 1 cut(s) 300
StuI AGGCCT 1 cut(s) 319
TaaI ACNGT 2 cut(s) 116, 325
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 143
TasI AATT 4 cut(s) 8, 15, 26, 229
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 3 cut(s) 14, 86, 366
Tru9I TTAA 3 cut(s) 14, 86, 366
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 3 cut(s) 116, 178, 329
Tsp45I GTSAC 3 cut(s) 116, 178, 329
TspDTI ATGAA 3 cut(s) 228, 258, 353
TspRI CASTG 1 cut(s) 121
XapI RAATTY 3 cut(s) 8, 26, 229
XceI RCATGY 2 cut(s) 203, 350
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.