Rw5G043930

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000224
Physical Location & Seq
Reverse (-)
77104233 .. 77105626
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043930.1

Sequence Viewer

Length: 891 bp
ATGTCGAAACGTCTTCGTTCGAACGTTTCCGGTGCCCAAAAGGCTAATGTTGGTGTCACTTTGACAAAACGGCGACGTGTACAAGCAAATGAACCTTCACTTCCAAATTCTTTGCAAGATGAACTTGATGTTCCTGATATGCCTACCTCTAATAGAACTACCCAAAGGGCTATTGCTAGTACCATTATCCAAAGACCTACTGTTGGTGACTCAATGAATGCACACGTTCAGTGCCAAACTACTAACCAGCCATCAATAAATGCTACAACTGAAGGGTTGAATGATGCTAGGACATCAGTCGATATCCAAGGATCTACTACAGGTACTCATTGTGTTGCTTTGTTGTATTTAAAATTTATTAATTATACATGTACTTCACTAATTAAATTTTTAACACAAGGTCCAGAAAAAAAAGTGCGTGGAAAGACAAGAGGTTTAAATGCTGATAAGGTGCATGAGCAGCTTGGTACTAAAATACCTGTGACTTTCAAGAAAGAAAATGGCAGACCCACAGGTCCATATGCAGAAATGTTTGCTAATGAAATTGGATTCACCATTCGGAACCATGCACCTCTAAATGTGAAAAAATGGAAGGAAGTAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACGACTAAGTATGACATTGACATGTCTCTACCTTGGGTTAAGAGATATGTGAATAAATCTTTTGGAACAGTGTTTGCTAACTTCCGTTATAAGCTGAAGAAGCATTTTGAGCAATTCTCAACAAAAGAGGAAGCATTAGAAAATAAACACAAAGATGTTAAAACTGAAGAAGAATGGGTTTTTTGTGCACTTATTTTTCTAGTGAAGATTTTCAGATTGTTTCAGAGAAAAATTCTATTAATAGGTCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

296

Amino Acids

33.71

Weight (kDa)

9.89

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
AasI GACNNNNNNGTC 1 cut(s) 513
AccB1I GGYRCC 1 cut(s) 32
AclI AACGTT 1 cut(s) 24
AclWI GGATC 1 cut(s) 319
AcsI RAATTY 4 cut(s) 106, 353, 386, 867
AcuI CTGAAG 3 cut(s) 291, 752, 822
AfaI GTAC 5 cut(s) 81, 181, 325, 373, 469
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 4 cut(s) 76, 223, 368, 657
AgsI TTSAA 2 cut(s) 280, 490
AjiI CACGTC 1 cut(s) 77
AluBI AGCT 2 cut(s) 463, 730
AluI AGCT 2 cut(s) 463, 730
Alw21I GWGCWC 1 cut(s) 826
Alw26I GTCTC 1 cut(s) 666
Alw44I GTGCAC 1 cut(s) 822
AlwI GGATC 1 cut(s) 319
ApaLI GTGCAC 1 cut(s) 822
ApeKI GCWGC 1 cut(s) 460
ApoI RAATTY 4 cut(s) 106, 353, 386, 867
AseI ATTAAT 2 cut(s) 360, 875
Asp700I GAANNNNTTC 1 cut(s) 845
AspS9I GGNCC 2 cut(s) 401, 515
AsuHPI GGTGA 2 cut(s) 218, 544
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 2 cut(s) 401, 515
BaeGI GKGCMC 2 cut(s) 37, 826
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 826
BbvI GCAGC 1 cut(s) 472
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 86
BclI TGATCA 1 cut(s) 624
BcoDI GTCTC 1 cut(s) 666
BfaI CTAG 3 cut(s) 177, 288, 836
BfmI CTRYAG 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
Bme18I GGWCC 2 cut(s) 401, 515
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 401, 515
BmiI GGNNCC 2 cut(s) 34, 563
BmsI GCATC 1 cut(s) 274
BoxI GACNNNNGTC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 5
BplI GAGNNNNNCTC 2 cut(s) 737, 769
Bpu14I TTCGAA 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 307, 668
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 307, 668
BseLI CCNNNNNNNGG 1 cut(s) 203
BseSI GKGCMC 2 cut(s) 37, 826
BseXI GCAGC 1 cut(s) 472
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 826
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 666
BsmI GAATGC 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 37, 826
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 2 cut(s) 311, 624
BspLI GGNNCC 2 cut(s) 34, 563
BspPI GGATC 1 cut(s) 319
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 307, 668
BssMI GATC 2 cut(s) 311, 624
BssT1I CCWWGG 2 cut(s) 307, 668
Bst4CI ACNGT 2 cut(s) 202, 706
BstAUI TGTACA 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 642
BstKTI GATC 2 cut(s) 314, 627
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 2 cut(s) 311, 624
BstMWI GCNNNNNNNGC 4 cut(s) 41, 460, 736, 745
BstNSI RCATGY 2 cut(s) 372, 661
BstPAI GACNNNNGTC 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 2 cut(s) 37, 826
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BtrI CACGTC 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 236, 711
Cfr13I GGNCC 2 cut(s) 401, 515
Csp6I GTAC 5 cut(s) 80, 180, 324, 372, 468
CviAII CATG 4 cut(s) 369, 455, 566, 658
CviJI RGCY 5 cut(s) 44, 170, 250, 463, 730
CviKI_1 RGCY 5 cut(s) 44, 170, 250, 463, 730
CviQI GTAC 5 cut(s) 80, 180, 324, 372, 468
DdeI CTNAG 1 cut(s) 642
DpnI GATC 2 cut(s) 313, 626
DpnII GATC 2 cut(s) 311, 624
DraI TTTAAA 2 cut(s) 351, 438
DrdI GACNNNNNNGTC 1 cut(s) 513
DseDI GACNNNNNNGTC 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 307, 668
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 2 cut(s) 401, 515
Eco57I CTGAAG 3 cut(s) 291, 752, 822
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 307, 668
ErhI CCWWGG 2 cut(s) 307, 668
FaeI CATG 4 cut(s) 372, 458, 569, 661
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FatI CATG 4 cut(s) 368, 454, 565, 657
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 624
Fnu4HI GCNGC 1 cut(s) 461
Fsp4HI GCNGC 1 cut(s) 461
FspBI CTAG 3 cut(s) 177, 288, 836
GluI GCNGC 1 cut(s) 461
HapII CCGG 1 cut(s) 30
Hin1II CATG 4 cut(s) 372, 458, 569, 661
HinfI GANTC 2 cut(s) 209, 549
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 218, 544
Hpy166II GTNNAC 2 cut(s) 80, 824
Hpy188I TCNGA 3 cut(s) 561, 851, 861
Hpy188III TCNNGA 3 cut(s) 134, 404, 490
Hpy8I GTNNAC 2 cut(s) 80, 824
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 105, 266, 586
HpyCH4III ACNGT 2 cut(s) 202, 706
HpyCH4IV ACGT 4 cut(s) 10, 24, 76, 225
HpyCH4V TGCA 6 cut(s) 115, 221, 454, 524, 569, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 460, 736, 745
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 4 cut(s) 10, 24, 76, 225
Hsp92II CATG 4 cut(s) 372, 458, 569, 661
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 2 cut(s) 311, 624
LpnPI CCDG 8 cut(s) 43, 147, 260, 306, 417, 492, 498, 618
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 274
MaeI CTAG 3 cut(s) 177, 288, 836
MaeII ACGT 4 cut(s) 10, 24, 76, 225
MaeIII GTNAC 4 cut(s) 55, 206, 481, 881
MalI GATC 2 cut(s) 313, 626
MboI GATC 2 cut(s) 311, 624
MboII GAAGA 6 cut(s) 5, 620, 745, 815, 818, 853
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 37, 826
MluCI AATT 8 cut(s) 106, 353, 361, 381, 386, 543, 749, 867
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 4 cut(s) 157, 425, 582, 757
MroXI GAANNNNTTC 1 cut(s) 845
MseI TTAA 8 cut(s) 350, 360, 384, 392, 437, 675, 795, 875
MslI CAYNNNNRTG 2 cut(s) 656, 789
MspI CCGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 4 cut(s) 41, 460, 736, 745
NdeI CATATG 1 cut(s) 520
NdeII GATC 2 cut(s) 311, 624
NlaIII CATG 4 cut(s) 372, 458, 569, 661
NlaIV GGNNCC 2 cut(s) 34, 563
NmuCI GTSAC 4 cut(s) 55, 206, 481, 881
NspI RCATGY 2 cut(s) 372, 661
NspV TTCGAA 1 cut(s) 20
PciI ACATGT 2 cut(s) 368, 657
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 845
PfeI GAWTC 1 cut(s) 549
PkrI GCNGC 1 cut(s) 462
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PscI ACATGT 2 cut(s) 368, 657
PshAI GACNNNNGTC 1 cut(s) 296
PshBI ATTAAT 2 cut(s) 360, 875
PsiI TTATAA 1 cut(s) 726
Psp1406I AACGTT 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 34, 563
PspPI GGNCC 2 cut(s) 401, 515
PsuI RGATCY 1 cut(s) 311
RsaI GTAC 5 cut(s) 81, 181, 325, 373, 469
RsaNI GTAC 5 cut(s) 80, 180, 324, 372, 468
RseI CAYNNNNRTG 2 cut(s) 656, 789
SaqAI TTAA 8 cut(s) 350, 360, 384, 392, 437, 675, 795, 875
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 2 cut(s) 311, 624
Sau96I GGNCC 2 cut(s) 401, 515
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 37, 826
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 2 cut(s) 401, 515
SmiMI CAYNNNNRTG 2 cut(s) 656, 789
Sse9I AATT 8 cut(s) 106, 353, 361, 381, 386, 543, 749, 867
SspMI CTAG 3 cut(s) 177, 288, 836
StyI CCWWGG 2 cut(s) 307, 668
TaaI ACNGT 2 cut(s) 202, 706
TaiI ACGT 4 cut(s) 13, 27, 79, 228
TaqI TCGA 3 cut(s) 5, 20, 300
TasI AATT 8 cut(s) 106, 353, 361, 381, 386, 543, 749, 867
TatI WGTACW 2 cut(s) 79, 371
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 8 cut(s) 350, 360, 384, 392, 437, 675, 795, 875
Tru9I TTAA 8 cut(s) 350, 360, 384, 392, 437, 675, 795, 875
TscAI CASTG 2 cut(s) 236, 711
TseFI GTSAC 4 cut(s) 55, 206, 481, 881
TseI GCWGC 1 cut(s) 460
Tsp45I GTSAC 4 cut(s) 55, 206, 481, 881
TspDTI ATGAA 4 cut(s) 105, 135, 230, 555
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 2 cut(s) 236, 711
VneI GTGCAC 1 cut(s) 822
VpaK11BI GGWCC 2 cut(s) 401, 515
VspI ATTAAT 2 cut(s) 360, 875
XapI RAATTY 4 cut(s) 106, 353, 386, 867
XceI RCATGY 2 cut(s) 372, 661
XmnI GAANNNNTTC 1 cut(s) 845
XspI CTAG 3 cut(s) 177, 288, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.