Rorug06G0408800

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000224
Physical Location & Seq
Forward (+)
55148356 .. 55150296
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0408800.1

Sequence Viewer

Length: 948 bp
ATGACGTCAGACGGAGCCACCTCGGCGTCGACGGTTAGGAGAAAGCCGTCGTGGAGAGAAAGAGAGAATAACAGGAGGAGAGAGAGGAGGAGGAGGGCGATTGCGGCGAAGATATTCTCCGGGCTTCGAGCTCAGGGGAGCTTCAACTTGCCCAAGCACTGCGACAACAACGAGGTCTTGAAGGCTCTCTGCGTCGAGGCCGGTTGGACTGTTGAAGAAGACGGCACCACTTATCGAAAGGGATTCAAGCCACCCCCAGCTGATACACCAGGCACTTCGACCAAAGTTACACCCTATTCTTCTCTGAATCCGAGTCCACTATCTTCTTCCTTTCCAAGTCCAATTCCTTCCTACCAAGCCAGTCCCTCATCCTCTTCTTTTCCAAGCCCATCTCGTTGCTTTGATGCCACCAATTCATCAAATCTGTTTCCCAATCTGCGATCTGCTGTACCTTCTTCTCTTCCTCCTCTCCGGATTTCTAATAGTGCCCCTGTGACCCCTCCACTCTCATCCCCCAACTCGAGAAAGTGCCAACCAATTCCCAATTGGGAGTCCATTGCCAAACAATCCATGGCCTCTTTCAATTACCCATTTTACGCTGTGTCTGCTCCAGCTAGTCCAACTCGTCACCAACATCAACTCCATACTCCTCCCACCATTTTTGAATGTGATGAGTCTGATACTTCAACTGTTGAATCTGGCCAATGGATGAACTTCCAGAAATTTGCCACCGCCTTGTCCGCAAGGCCAACCTCTCCGACCTTCAATCTTGTGAAACCTGTCACTGCTCAGCAAAACTTGCCAGCTAATGGAATGGCAGAGATGGGGAGAGGATCAGAGTTTGAGTTTCTCGGGGAACAAGTGAAGCCATGGGTTGGGGAGAGGATTCATGAGGTGGGATTGGATGATTTAGAGCTCACACTTGGCAATGGTAAGGCCCGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

315

Amino Acids

34.46

Weight (kDa)

9.37

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 13 - 138 5.6e-61 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 2 cut(s) 809, 875
AccI GTMKAC 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 471
AciI CCGC 3 cut(s) 104, 732, 741
AclWI GGATC 1 cut(s) 841
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 1 cut(s) 722
AcyI GRCGYC 2 cut(s) 5, 26
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 809, 875
AgsI TTSAA 9 cut(s) 145, 181, 215, 247, 583, 665, 687, 695, 766
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 6 cut(s) 131, 141, 260, 614, 806, 916
AluI AGCT 6 cut(s) 131, 141, 260, 614, 806, 916
Alw21I GWGCWC 2 cut(s) 133, 918
AlwI GGATC 1 cut(s) 841
Ama87I CYCGRG 2 cut(s) 520, 851
Aor13HI TCCGGA 1 cut(s) 471
AoxI GGCC 5 cut(s) 198, 573, 700, 746, 936
ApoI RAATTY 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 937
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 620
AvaI CYCGRG 2 cut(s) 520, 851
BaeGI GKGCMC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 702
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 2 cut(s) 133, 918
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 133, 918
BccI CCATC 2 cut(s) 397, 817
BceAI ACGGC 2 cut(s) 31, 238
BciT130I CCWGG 1 cut(s) 270
BcnI CCSGG 1 cut(s) 121
BfaI CTAG 1 cut(s) 615
BglI GCCNNNNNGGC 1 cut(s) 23
BisI GCNGC 1 cut(s) 105
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 121, 270
BmeT110I CYCGRG 2 cut(s) 520, 851
BmgT120I GGNCC 1 cut(s) 937
BmiI GGNNCC 2 cut(s) 16, 226
BmrFI CCNGG 2 cut(s) 121, 270
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 132
Bpu1102I GCTNAGC 1 cut(s) 789
BpuMI CCSGG 1 cut(s) 121
BsaHI GRCGYC 2 cut(s) 5, 26
BsaJI CCNNGG 3 cut(s) 21, 570, 869
BsaWI WCCGGW 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 2 cut(s) 809, 875
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 360
Bse3DI GCAATG 2 cut(s) 555, 934
BseAI TCCGGA 1 cut(s) 471
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 21, 570, 869
BseGI GGATG 4 cut(s) 368, 509, 714, 910
BseLI CCNNNNNNNGG 2 cut(s) 809, 875
BseMI GCAATG 2 cut(s) 555, 934
BseMII CTCAG 2 cut(s) 146, 803
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 6 cut(s) 91, 100, 103, 106, 456, 639
BseSI GKGCMC 1 cut(s) 490
BseYI CCCAGC 1 cut(s) 256
BshFI GGCC 5 cut(s) 200, 575, 702, 748, 938
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 2 cut(s) 133, 918
BsiHKCI CYCGRG 2 cut(s) 520, 851
BsiSI CCGG 3 cut(s) 120, 201, 472
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 809, 875
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 5 cut(s) 200, 575, 702, 748, 938
BsoBI CYCGRG 2 cut(s) 520, 851
Bsp1286I GDGCHC 3 cut(s) 133, 490, 918
Bsp13I TCCGGA 1 cut(s) 471
Bsp143I GATC 2 cut(s) 440, 833
Bsp1720I GCTNAGC 1 cut(s) 789
Bsp19I CCATGG 2 cut(s) 570, 869
BspACI CCGC 3 cut(s) 104, 732, 741
BspANI GGCC 5 cut(s) 200, 575, 702, 748, 938
BspCNI CTCAG 2 cut(s) 145, 802
BspEI TCCGGA 1 cut(s) 471
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 2 cut(s) 16, 226
BspPI GGATC 1 cut(s) 841
BspT107I GGYRCC 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 555, 934
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 21, 570, 869
BssMI GATC 2 cut(s) 440, 833
BssNI GRCGYC 2 cut(s) 5, 26
BssT1I CCWWGG 2 cut(s) 570, 869
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 3 cut(s) 34, 211, 691
Bst6I CTCTTC 2 cut(s) 379, 465
BstACI GRCGYC 2 cut(s) 5, 26
BstAPI GCANNNNNTGC 1 cut(s) 799
BstC8I GCNNGC 1 cut(s) 804
BstDEI CTNAG 2 cut(s) 132, 789
BstDSI CCRYGG 2 cut(s) 570, 869
BstF5I GGATG 4 cut(s) 368, 509, 714, 910
BstKTI GATC 2 cut(s) 443, 836
BstMBI GATC 2 cut(s) 440, 833
BstMWI GCNNNNNNNGC 5 cut(s) 23, 104, 605, 740, 799
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 119, 268
BstSLI GKGCMC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 5 cut(s) 200, 575, 702, 748, 938
BtgI CCRYGG 2 cut(s) 570, 869
BtsCI GGATG 4 cut(s) 368, 509, 714, 910
BtsI GCAGTG 2 cut(s) 157, 783
BtsIMutI CAGTG 2 cut(s) 157, 783
Cac8I GCNNGC 1 cut(s) 804
CciI TCATGA 1 cut(s) 889
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 937
CseI GACGC 2 cut(s) 15, 181
Csp6I GTAC 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 3 cut(s) 571, 870, 890
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 2 cut(s) 132, 789
DpnI GATC 2 cut(s) 442, 835
DpnII GATC 2 cut(s) 440, 833
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 2 cut(s) 379, 465
EarI CTCTTC 2 cut(s) 379, 465
Ecl136II GAGCTC 2 cut(s) 131, 916
Eco130I CCWWGG 2 cut(s) 570, 869
Eco24I GRGCYC 2 cut(s) 133, 918
Eco53kI GAGCTC 2 cut(s) 131, 916
Eco88I CYCGRG 2 cut(s) 520, 851
EcoICRI GAGCTC 2 cut(s) 131, 916
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 570, 869
EcoT38I GRGCYC 2 cut(s) 133, 918
ErhI CCWWGG 2 cut(s) 570, 869
FaeI CATG 3 cut(s) 574, 873, 893
FaiI YATR 4 cut(s) 572, 645, 871, 891
FaqI GGGAC 1 cut(s) 348
FatI CATG 3 cut(s) 570, 869, 889
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 4 cut(s) 355, 496, 721, 917
FriOI GRGCYC 2 cut(s) 133, 918
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 615
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 5 cut(s) 200, 575, 702, 748, 938
HapII CCGG 3 cut(s) 120, 201, 472
HgaI GACGC 2 cut(s) 15, 181
Hin1I GRCGYC 2 cut(s) 5, 26
Hin1II CATG 3 cut(s) 574, 873, 893
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 7 cut(s) 243, 307, 313, 551, 674, 695, 886
HpaII CCGG 3 cut(s) 120, 201, 472
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 2 cut(s) 30, 317
Hpy188I TCNGA 6 cut(s) 10, 306, 312, 679, 759, 838
Hpy188III TCNNGA 5 cut(s) 178, 472, 522, 718, 890
Hpy8I GTNNAC 2 cut(s) 30, 317
Hpy99I CGWCG 4 cut(s) 31, 34, 52, 197
HpyAV CCTTC 4 cut(s) 175, 357, 462, 772
HpyCH4III ACNGT 3 cut(s) 34, 211, 691
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 104, 605, 740, 799
HpyF3I CTNAG 2 cut(s) 132, 789
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 2 cut(s) 5, 26
Hsp92II CATG 3 cut(s) 574, 873, 893
Kpn2I TCCGGA 1 cut(s) 471
Kzo9I GATC 2 cut(s) 440, 833
LmnI GCTCC 3 cut(s) 14, 138, 613
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 615
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 4 cut(s) 286, 493, 626, 781
MalI GATC 2 cut(s) 442, 835
MboI GATC 2 cut(s) 440, 833
MboII GAAGA 9 cut(s) 121, 227, 230, 291, 315, 318, 366, 447, 452
MfeI CAATTG 1 cut(s) 544
MhlI GDGCHC 3 cut(s) 133, 490, 918
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 6 cut(s) 342, 412, 537, 544, 583, 722
MluNI TGGCCA 1 cut(s) 702
MlyI GAGTC 3 cut(s) 322, 560, 683
MmeI TCCRAC 3 cut(s) 185, 644, 782
Mox20I TGGCCA 1 cut(s) 702
MroI TCCGGA 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 702
Msp20I TGGCCA 1 cut(s) 702
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 3 cut(s) 120, 201, 472
MspR9I CCNGG 2 cut(s) 121, 270
MunI CAATTG 1 cut(s) 544
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 5 cut(s) 23, 104, 605, 740, 799
NciI CCSGG 1 cut(s) 121
NcoI CCATGG 2 cut(s) 570, 869
NdeII GATC 2 cut(s) 440, 833
NlaIII CATG 3 cut(s) 574, 873, 893
NlaIV GGNNCC 2 cut(s) 16, 226
NmuCI GTSAC 3 cut(s) 493, 626, 781
PaeR7I CTCGAG 1 cut(s) 520
PagI TCATGA 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 4 cut(s) 243, 307, 695, 886
PflMI CCANNNNNTGG 2 cut(s) 809, 875
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 3 cut(s) 321, 559, 682
PpsI GAGTC 3 cut(s) 321, 559, 682
Psp124BI GAGCTC 2 cut(s) 133, 918
Psp6I CCWGG 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 16, 226
PspPI GGNCC 1 cut(s) 937
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SacI GAGCTC 2 cut(s) 133, 918
SalI GTCGAC 1 cut(s) 28
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 440, 833
Sau96I GGNCC 1 cut(s) 937
SchI GAGTC 3 cut(s) 322, 560, 683
ScrFI CCNGG 2 cut(s) 121, 270
SduI GDGCHC 3 cut(s) 133, 490, 918
SfaNI GCATC 1 cut(s) 394
Sfr274I CTCGAG 1 cut(s) 520
SgrDI CGTCGACG 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
Sse9I AATT 6 cut(s) 342, 412, 537, 544, 583, 722
SsiI CCGC 3 cut(s) 104, 732, 741
SspMI CTAG 1 cut(s) 615
SstI GAGCTC 2 cut(s) 133, 918
StyD4I CCNGG 2 cut(s) 119, 268
StyI CCWWGG 2 cut(s) 570, 869
TaaI ACNGT 3 cut(s) 34, 211, 691
TaiI ACGT 1 cut(s) 8
TaqI TCGA 6 cut(s) 29, 127, 195, 235, 278, 521
TasI AATT 6 cut(s) 342, 412, 537, 544, 583, 722
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 4 cut(s) 243, 307, 695, 886
TscAI CASTG 2 cut(s) 164, 790
TseFI GTSAC 3 cut(s) 493, 626, 781
Tsp45I GTSAC 3 cut(s) 493, 626, 781
TspDTI ATGAA 3 cut(s) 405, 725, 878
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 2 cut(s) 164, 790
Van91I CCANNNNNTGG 2 cut(s) 809, 875
XapI RAATTY 1 cut(s) 722
XcmI CCANNNNNNNNNTGG 2 cut(s) 543, 568
XhoI CTCGAG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 615
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.