Rorug07G0203000

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000224
Physical Location & Seq
Reverse (-)
17764673 .. 17767758
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0203000.1

Sequence Viewer

Length: 984 bp
ATGGCTCTCGTCCAAAGAGCCTCACCAAAACGCCTCCCCAAACTTTTCGGATTTGCAAAACGGTCCATCAGGTCCTTGAGATTCCCGGGTGAGTCCCCCGACTGTTCATCTTCTCCAACTCTCGCTTATGGAATCCACGTCTTCCATTGCCCGGATGCAGTTGGGATTGTGGCCAAGCTTTCGGAGTCCATTGCTTCTAGAGGAGGTAACATACTCGCTGCCAATGTTTTTGTGCCTGAAAACAAGCACGTCTTCTATTCCAGAAGTGAGTTTATTTTTGATCCTGTTAAATGGACAAGATCACAAATGAATGAGGATTTCAATAAGCTATCACAAATGTACGCCGCTCATAGATCTGTGGTCCGAGTGCCAGATCAAGATCCCAAATATAAGATTGGTGTCCTTGCATCAAAGCAGGATCATTGCCTGATTGATTTGCTACATCAATGGCAGGATGGAAAACTACCAGTAGATATAGCTTGTGTAATAAGTAATCACGAGAGGGGTCCAAACACTGGTGTGTGTCGGTTTCTAGAAAGACATGGTATACCGTATCATTATCTTCACACGACCGAAGAGAATAAAAGAGAAGAGGAAATATTGGAGTTGGTTCAAGATACCGACTTTTTAGTCCTTGCGAGGTACATGCAGATATTATCTGGCAATTTTTTAAATAGCTACGGAAAAGATGTAATTAACATTCATCATGGTCTTTTGCCATCATTCAAGGGTGGAAGACCTTCTAAACAGGCTTTTGATGCAGGGGTGAAGCTTATTGGTGCAACAACTCATTTTGTGACCCAAGAACTTGATGCAGGGCCTATTATTGAACAGATGGTTGCAAGAGTGTCCCACAGAGATAACTTGCAGAGTTTTGTGCAGAAGTCGGAGAACCTTGAAAAACAATGCCTTTCAAGGTCTATCAAATCATACTGTGAACTGCGGGTGTTACCTTATGAGGATAACAAGACTGTTGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
CBM49 Glyco_hydro_9

Protein Analysis

327

Amino Acids

37.01

Weight (kDa)

8.58

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 131 - 307 2.4e-34 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 515
AccBSI CCGCTC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 547
AciI CCGC 2 cut(s) 345, 943
AclWI GGATC 3 cut(s) 275, 374, 426
AcoI YGGCCR 1 cut(s) 171
AfaI GTAC 2 cut(s) 341, 644
AfiI CCNNNNNNNGG 2 cut(s) 151, 515
AgsI TTSAA 6 cut(s) 322, 614, 727, 830, 899, 915
AjiI CACGTC 2 cut(s) 139, 250
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 5 cut(s) 178, 328, 479, 678, 772
AluI AGCT 5 cut(s) 178, 328, 479, 678, 772
AlwI GGATC 3 cut(s) 275, 374, 426
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 2 cut(s) 171, 818
ApeKI GCWGC 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 739
AspS9I GGNCC 5 cut(s) 63, 72, 361, 506, 818
AsuC2I CCSGG 3 cut(s) 86, 87, 152
AsuHPI GGTGA 3 cut(s) 15, 101, 778
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 4 cut(s) 63, 72, 361, 506
BalI TGGCCA 1 cut(s) 173
BauI CACGAG 1 cut(s) 497
BbsI GAAGAC 3 cut(s) 133, 244, 742
BbvI GCAGC 1 cut(s) 205
BccI CCATC 4 cut(s) 74, 449, 727, 829
BcgI CGANNNNNNTGC 2 cut(s) 628, 662
BcnI CCSGG 3 cut(s) 86, 87, 152
BfaI CTAG 2 cut(s) 198, 533
BglII AGATCT 1 cut(s) 353
BisI GCNGC 2 cut(s) 219, 345
BlsI GCNGC 2 cut(s) 220, 346
Bme1390I CCNGG 3 cut(s) 86, 87, 152
Bme18I GGWCC 4 cut(s) 63, 72, 361, 506
BmeT110I CYCGRG 1 cut(s) 85
BmgBI CACGTC 2 cut(s) 139, 250
BmgT120I GGNCC 5 cut(s) 63, 72, 361, 506, 818
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 3 cut(s) 86, 87, 152
BmsI GCATC 4 cut(s) 145, 416, 748, 802
BpiI GAAGAC 3 cut(s) 133, 244, 742
BpuEI CTTGAG 1 cut(s) 97
BpuMI CCSGG 3 cut(s) 86, 87, 152
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 515
Bse1I ACTGG 2 cut(s) 467, 520
Bse3DI GCAATG 3 cut(s) 145, 189, 421
Bse8I GATNNNNATC 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 2 cut(s) 160, 460
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 151, 515
BseMI GCAATG 3 cut(s) 145, 189, 421
BseNI ACTGG 2 cut(s) 467, 520
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 899
Bsh1285I CGRYCG 1 cut(s) 573
BshFI GGCC 2 cut(s) 173, 820
BsiEI CGRYCG 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 2 cut(s) 86, 152
BslFI GGGAC 2 cut(s) 79, 835
BslI CCNNNNNNNGG 2 cut(s) 151, 515
BsmFI GGGAC 2 cut(s) 79, 835
BsnI GGCC 2 cut(s) 173, 820
BsoBI CYCGRG 1 cut(s) 85
Bsp143I GATC 6 cut(s) 280, 299, 353, 373, 379, 418
BspACI CCGC 2 cut(s) 345, 943
BspANI GGCC 2 cut(s) 173, 820
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 3 cut(s) 275, 374, 426
BsrBI CCGCTC 1 cut(s) 347
BsrDI GCAATG 3 cut(s) 145, 189, 421
BsrI ACTGG 2 cut(s) 467, 520
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 6 cut(s) 280, 299, 353, 373, 379, 418
BssNAI GTATAC 1 cut(s) 548
BssSI CACGAG 1 cut(s) 497
Bst1107I GTATAC 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 497
Bst4CI ACNGT 5 cut(s) 63, 104, 552, 935, 973
Bst6I CTCTTC 2 cut(s) 570, 585
BstF5I GGATG 2 cut(s) 160, 460
BstKTI GATC 6 cut(s) 283, 302, 356, 376, 382, 421
BstMBI GATC 6 cut(s) 280, 299, 353, 373, 379, 418
BstMCI CGRYCG 1 cut(s) 573
BstMWI GCNNNNNNNGC 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 3 cut(s) 84, 85, 150
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 3 cut(s) 133, 244, 742
BstX2I RGATCY 2 cut(s) 353, 379
BstYI RGATCY 2 cut(s) 353, 379
BstZ17I GTATAC 1 cut(s) 548
BsuRI GGCC 2 cut(s) 173, 820
BtrI CACGTC 2 cut(s) 139, 250
BtsCI GGATG 2 cut(s) 160, 460
BtsIMutI CAGTG 1 cut(s) 513
Cfr13I GGNCC 5 cut(s) 63, 72, 361, 506, 818
Cfr9I CCCGGG 1 cut(s) 85
Csp6I GTAC 2 cut(s) 340, 643
CviAII CATG 3 cut(s) 542, 646, 707
CviQI GTAC 2 cut(s) 340, 643
DpnI GATC 6 cut(s) 282, 301, 355, 375, 381, 420
DpnII GATC 6 cut(s) 280, 299, 353, 373, 379, 418
DraI TTTAAA 1 cut(s) 672
DrdI GACNNNNNNGTC 1 cut(s) 629
DseDI GACNNNNNNGTC 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 570, 585
EarI CTCTTC 2 cut(s) 570, 585
Eco47I GGWCC 4 cut(s) 63, 72, 361, 506
Eco88I CYCGRG 1 cut(s) 85
EcoO109I RGGNCCY 2 cut(s) 72, 818
FaeI CATG 3 cut(s) 545, 649, 710
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 79, 835
FatI CATG 3 cut(s) 541, 645, 706
FauI CCCGC 1 cut(s) 936
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 219, 345
FokI GGATG 2 cut(s) 167, 467
Fsp4HI GCNGC 2 cut(s) 219, 345
FspBI CTAG 2 cut(s) 198, 533
GluI GCNGC 2 cut(s) 219, 345
HaeIII GGCC 2 cut(s) 173, 820
HapII CCGG 2 cut(s) 86, 152
Hin1II CATG 3 cut(s) 545, 649, 710
HindIII AAGCTT 2 cut(s) 176, 770
HinfI GANTC 4 cut(s) 81, 92, 132, 185
HpaII CCGG 2 cut(s) 86, 152
HphI GGTGA 3 cut(s) 15, 101, 778
Hpy166II GTNNAC 2 cut(s) 548, 938
Hpy188I TCNGA 4 cut(s) 50, 184, 365, 889
Hpy188III TCNNGA 6 cut(s) 198, 261, 377, 497, 533, 614
Hpy8I GTNNAC 2 cut(s) 548, 938
HpyAV CCTTC 1 cut(s) 750
HpyCH4III ACNGT 5 cut(s) 63, 104, 552, 935, 973
HpyCH4IV ACGT 2 cut(s) 138, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 758
HpySE526I ACGT 2 cut(s) 138, 249
Hsp92II CATG 3 cut(s) 545, 649, 710
Kzo9I GATC 6 cut(s) 280, 299, 353, 373, 379, 418
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 4 cut(s) 145, 416, 748, 802
MaeI CTAG 2 cut(s) 198, 533
MaeII ACGT 2 cut(s) 138, 249
MaeIII GTNAC 3 cut(s) 206, 796, 948
MalI GATC 6 cut(s) 282, 301, 355, 375, 381, 420
MbiI CCGCTC 1 cut(s) 347
MboI GATC 6 cut(s) 280, 299, 353, 373, 379, 418
MboII GAAGA 7 cut(s) 102, 133, 244, 554, 587, 602, 747
MflI RGATCY 2 cut(s) 353, 379
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 2 cut(s) 664, 693
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 2 cut(s) 101, 194
MmeI TCCRAC 2 cut(s) 140, 867
MnlI CCTC 9 cut(s) 31, 44, 194, 197, 307, 495, 586, 633, 952
Mox20I TGGCCA 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 739
MscI TGGCCA 1 cut(s) 173
MseI TTAA 3 cut(s) 288, 671, 696
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 2 cut(s) 86, 152
MspR9I CCNGG 3 cut(s) 86, 87, 152
MwoI GCNNNNNNNGC 1 cut(s) 758
NciI CCSGG 3 cut(s) 86, 87, 152
NdeII GATC 6 cut(s) 280, 299, 353, 373, 379, 418
NlaIII CATG 3 cut(s) 545, 649, 710
NlaIV GGNNCC 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 796
NspI RCATGY 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 518
PdmI GAANNNNTTC 1 cut(s) 739
PfeI GAWTC 2 cut(s) 81, 132
PflMI CCANNNNNTGG 1 cut(s) 515
PkrI GCNGC 2 cut(s) 220, 346
PleI GAGTC 2 cut(s) 100, 193
PpsI GAGTC 2 cut(s) 100, 193
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 5 cut(s) 63, 72, 361, 506, 818
PspPPI RGGWCCY 1 cut(s) 72
PsuI RGATCY 2 cut(s) 353, 379
RsaI GTAC 2 cut(s) 341, 644
RsaNI GTAC 2 cut(s) 340, 643
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 3 cut(s) 288, 671, 696
SatI GCNGC 2 cut(s) 219, 345
Sau3AI GATC 6 cut(s) 280, 299, 353, 373, 379, 418
Sau96I GGNCC 5 cut(s) 63, 72, 361, 506, 818
SchI GAGTC 2 cut(s) 101, 194
ScrFI CCNGG 3 cut(s) 86, 87, 152
SfaNI GCATC 4 cut(s) 145, 416, 748, 802
SinI GGWCC 4 cut(s) 63, 72, 361, 506
SmaI CCCGGG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 2 cut(s) 664, 693
SsiI CCGC 2 cut(s) 345, 943
SspI AATATT 1 cut(s) 600
SspMI CTAG 2 cut(s) 198, 533
StyD4I CCNGG 3 cut(s) 84, 85, 150
TaaI ACNGT 5 cut(s) 63, 104, 552, 935, 973
TaiI ACGT 2 cut(s) 141, 252
TaqII GACCGA 1 cut(s) 587
TasI AATT 2 cut(s) 664, 693
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 2 cut(s) 81, 132
Tru1I TTAA 3 cut(s) 288, 671, 696
Tru9I TTAA 3 cut(s) 288, 671, 696
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 3 cut(s) 96, 323, 692
TspGWI ACGGA 1 cut(s) 696
TspMI CCCGGG 1 cut(s) 85
TspRI CASTG 1 cut(s) 520
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 4 cut(s) 63, 72, 361, 506
XbaI TCTAGA 2 cut(s) 197, 532
XceI RCATGY 1 cut(s) 649
XmaI CCCGGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 547
XmnI GAANNNNTTC 1 cut(s) 739
XspI CTAG 2 cut(s) 198, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.