Rw7G038240

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000224
Physical Location & Seq
Forward (+)
58241566 .. 58242250
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038240.1

Sequence Viewer

Length: 390 bp
ATGCGTGGAAAGACAAGAGGTTTAAATGCTGATAAGGTGCATGAGCAGCTTAGTACTAAAATACCTGTGACTTTCAAGAAAGAAAATGGCAGACCCACAGGTCCATATGCAGAAATGTTTGCTAATGAAATTGGATTCACCATTCGGAACCATGCATCTCTGAATGTGAAAAAATGGAAGGAAGTAAAACCAGAAGATAGGACAATTTTGATCAAAAGAATAACTACTAAGTACGACATTGACATGTCTCTACCTTGGGAGCAATTGAACACTTTGAAATGGAGTACAAAAGCATTAAAAAGGGTTGGGACTTGGGTGCGAAAGAATTATAGGATCAAATGGTTAAGATGCGAACTGAGACAACCCTTCCTGATGGGACTCGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

129

Amino Acids

15.26

Weight (kDa)

10.22

Isoelectric Point (pI)

28.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 99
AclWI GGATC 1 cut(s) 341
AfaI GTAC 3 cut(s) 55, 233, 286
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 3 cut(s) 76, 268, 277
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 252, 352
AlwI GGATC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 367
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 252, 352
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BmcAI AGTACT 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 149
BmsI GCATC 2 cut(s) 164, 338
BsaJI CCNNGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 252, 352
BsmFI GGGAC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 210, 333
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 149
BspPI GGATC 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 210, 333
BssT1I CCWWGG 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 50, 228, 356
BstKTI GATC 2 cut(s) 213, 336
BstMAI GTCTC 2 cut(s) 252, 352
BstMBI GATC 2 cut(s) 210, 333
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 54, 232, 285
CviAII CATG 4 cut(s) 41, 152, 244, 387
CviJI RGCY 1 cut(s) 49
CviKI_1 RGCY 1 cut(s) 49
CviQI GTAC 3 cut(s) 54, 232, 285
DdeI CTNAG 3 cut(s) 50, 228, 356
DpnI GATC 2 cut(s) 212, 335
DpnII GATC 2 cut(s) 210, 333
DraI TTTAAA 1 cut(s) 24
DrdI GACNNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 4 cut(s) 44, 155, 247, 390
FaiI YATR 7 cut(s) 42, 106, 108, 153, 245, 330, 388
FaqI GGGAC 1 cut(s) 322
FatI CATG 4 cut(s) 40, 151, 243, 386
FauNDI CATATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
Hin1II CATG 4 cut(s) 44, 155, 247, 390
HinfI GANTC 2 cut(s) 135, 378
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 147, 162
Hpy188III TCNNGA 2 cut(s) 76, 370
HpyAV CCTTC 2 cut(s) 172, 376
HpyCH4V TGCA 3 cut(s) 40, 110, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 3 cut(s) 50, 228, 356
Hsp92II CATG 4 cut(s) 44, 155, 247, 390
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 2 cut(s) 210, 333
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 4 cut(s) 78, 84, 204, 383
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 164, 338
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 212, 335
MboI GATC 2 cut(s) 210, 333
MboII GAAGA 1 cut(s) 206
MfeI CAATTG 1 cut(s) 263
MluCI AATT 4 cut(s) 129, 204, 263, 325
MlyI GAGTC 1 cut(s) 372
MnlI CCTC 1 cut(s) 11
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 3 cut(s) 23, 296, 344
MslI CAYNNNNRTG 1 cut(s) 242
MunI CAATTG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeI CATATG 1 cut(s) 106
NdeII GATC 2 cut(s) 210, 333
NlaIII CATG 4 cut(s) 44, 155, 247, 390
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 1 cut(s) 247
PciI ACATGT 1 cut(s) 243
PfeI GAWTC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
PscI ACATGT 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 3 cut(s) 55, 233, 286
RsaNI GTAC 3 cut(s) 54, 232, 285
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 3 cut(s) 23, 296, 344
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 2 cut(s) 210, 333
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 1 cut(s) 372
SetI ASST 6 cut(s) 22, 39, 51, 67, 103, 256
SfaNI GCATC 2 cut(s) 164, 338
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 4 cut(s) 129, 204, 263, 325
StyI CCWWGG 1 cut(s) 254
TaqI TCGA 1 cut(s) 381
TasI AATT 4 cut(s) 129, 204, 263, 325
TatI WGTACW 2 cut(s) 53, 284
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 3 cut(s) 23, 296, 344
Tru9I TTAA 3 cut(s) 23, 296, 344
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 101
XceI RCATGY 1 cut(s) 247
ZrmI AGTACT 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.