RchiOBHm_Chr2g0106131

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000224
Physical Location & Seq
Forward (+)
17538111 .. 17538907
797 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48024

Sequence Viewer

Length: 432 bp
ATGCCTACCTCTAATAGAACTACCCAAAGGGCTATTGCTAGTACCATTATCCAAAGGCCTGCTGTTGGTGACTCAATGAATGCACACGTTCAGTGCCAAACTACTAACCAGCCATCAATAAATGCTACAACTGAAGGGTTGAATGATGCTAGGACATCAGTCGATATCCAAGGATCTACTACAGGTCCAGAAAAAAAAGTGCGTGGAAAGACAAGAGGTTTAAATGCTGATAAGGTGCATGAGCAGCTTGGTACTAAAATACCTGTGACTTTCAAGAAAGAAAATGGCAGACCCACAGGTCCATATGCAGAAATGTTTGCTAATGAAATTGGATTCACCATTCGGAACCATGCACCTCTAAATGTGAAAAAATGGAAGGAAGTAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACTGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

143

Amino Acids

15.75

Weight (kDa)

10.06

Isoelectric Point (pI)

20.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 297
AclWI GGATC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 43, 253
AfiI CCNNNNNNNGG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 2 cut(s) 142, 274
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 185, 299
AsuHPI GGTGA 2 cut(s) 80, 328
AvaII GGWCC 2 cut(s) 185, 299
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 121
BclI TGATCA 1 cut(s) 408
BfaI CTAG 2 cut(s) 39, 150
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 185, 299
BmgT120I GGNCC 2 cut(s) 185, 299
BmiI GGNNCC 1 cut(s) 347
BmsI GCATC 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 65
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 173, 408
BspANI GGCC 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 173, 408
BssT1I CCWWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 60
BstKTI GATC 2 cut(s) 176, 411
BstMBI GATC 2 cut(s) 173, 408
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstPAI GACNNNNGTC 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 185, 299
Csp6I GTAC 2 cut(s) 42, 252
CviAII CATG 2 cut(s) 239, 350
CviJI RGCY 4 cut(s) 32, 58, 112, 247
CviKI_1 RGCY 4 cut(s) 32, 58, 112, 247
CviQI GTAC 2 cut(s) 42, 252
DpnI GATC 2 cut(s) 175, 410
DpnII GATC 2 cut(s) 173, 408
DraI TTTAAA 1 cut(s) 222
DrdI GACNNNNNNGTC 1 cut(s) 297
DseDI GACNNNNNNGTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 58
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 185, 299
Eco57I CTGAAG 1 cut(s) 153
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 2 cut(s) 242, 353
FaiI YATR 4 cut(s) 240, 304, 306, 351
FatI CATG 2 cut(s) 238, 349
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 2 cut(s) 39, 150
GluI GCNGC 1 cut(s) 245
HaeIII GGCC 1 cut(s) 58
Hin1II CATG 2 cut(s) 242, 353
HinfI GANTC 2 cut(s) 71, 333
HphI GGTGA 2 cut(s) 80, 328
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 188, 274
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 2 cut(s) 128, 370
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 4 cut(s) 83, 238, 308, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 2 cut(s) 242, 353
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 2 cut(s) 173, 408
LpnPI CCDG 7 cut(s) 72, 122, 168, 201, 276, 282, 402
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 39, 150
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 68, 265
MalI GATC 2 cut(s) 175, 410
MboI GATC 2 cut(s) 173, 408
MboII GAAGA 1 cut(s) 404
MflI RGATCY 1 cut(s) 173
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 3 cut(s) 19, 209, 366
MseI TTAA 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeI CATATG 1 cut(s) 304
NdeII GATC 2 cut(s) 173, 408
NlaIII CATG 2 cut(s) 242, 353
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 2 cut(s) 68, 265
PceI AGGCCT 1 cut(s) 58
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 333
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PshAI GACNNNNGTC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 185, 299
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 2 cut(s) 43, 253
RsaNI GTAC 2 cut(s) 42, 252
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 2 cut(s) 173, 408
Sau96I GGNCC 2 cut(s) 185, 299
SchI GAGTC 1 cut(s) 65
SetI ASST 9 cut(s) 11, 90, 187, 220, 237, 249, 265, 301, 358
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 2 cut(s) 185, 299
Sse9I AATT 1 cut(s) 327
SseBI AGGCCT 1 cut(s) 58
SspMI CTAG 2 cut(s) 39, 150
StuI AGGCCT 1 cut(s) 58
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 327
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 98
TseFI GTSAC 2 cut(s) 68, 265
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 2 cut(s) 68, 265
TspDTI ATGAA 2 cut(s) 92, 339
TspRI CASTG 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 185, 299
XspI CTAG 2 cut(s) 39, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.