Rorug04G0047600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000224
Physical Location & Seq
Reverse (-)
7378754 .. 7379466
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0047600.1

Sequence Viewer

Length: 237 bp
ATGATAAAAAGAAATTCAAAGCTGTTATACGCATTTATCTCCACTCCTTGCTTGAACCCAAAGCGCCGCTCATACCCTTTGGGTTTTGGCCTTCACAATGGATGCAGCGACCCAAGACATGAGACAGCGACGACGTCGGACGAGGCATCTCCGATGGATGGCGAGTATAGGAGGAAAGATAAGCACTTGAATAAGGTTGATGCTGCAGATGATGGAGATGTGCGCGCATCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.69

Weight (kDa)

8.66

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 137
AccBSI CCGCTC 1 cut(s) 69
AccII CGCG 1 cut(s) 225
AciI CCGC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 18, 55, 190
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 105, 203
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 3 cut(s) 66, 225, 227
BbvI GCAGC 2 cut(s) 117, 190
BccI CCATC 3 cut(s) 148, 152, 206
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 67
BisI GCNGC 3 cut(s) 67, 106, 204
BlsI GCNGC 3 cut(s) 68, 107, 205
BmsI GCATC 3 cut(s) 92, 155, 190
BsaHI GRCGYC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseGI GGATG 2 cut(s) 107, 163
BseLI CCNNNNNNNGG 1 cut(s) 158
BsePI GCGCGC 1 cut(s) 223
BseXI GCAGC 2 cut(s) 117, 190
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 90
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 208
BsrBI CCGCTC 1 cut(s) 69
BssHII GCGCGC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 2 cut(s) 107, 163
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 3 cut(s) 66, 225, 227
BstMAI GTCTC 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 204
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 117, 190
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 107, 163
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 3 cut(s) 66, 225, 227
CviAII CATG 1 cut(s) 119
CviJI RGCY 2 cut(s) 22, 90
CviKI_1 RGCY 2 cut(s) 22, 90
FaeI CATG 1 cut(s) 122
FaiI YATR 4 cut(s) 28, 73, 120, 168
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 67, 106, 204
FokI GGATG 2 cut(s) 114, 170
Fsp4HI GCNGC 3 cut(s) 67, 106, 204
FspBI CTAG 1 cut(s) 235
GlaI GCGC 3 cut(s) 65, 224, 226
GluI GCNGC 3 cut(s) 67, 106, 204
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 1 cut(s) 90
HhaI GCGC 3 cut(s) 66, 225, 227
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 3 cut(s) 64, 223, 225
HinP1I GCGC 3 cut(s) 64, 223, 225
Hpy188I TCNGA 2 cut(s) 139, 153
Hpy99I CGWCG 3 cut(s) 133, 136, 139
HpyAV CCTTC 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 105, 206
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 3 cut(s) 64, 223, 225
Lsp1109I GCAGC 2 cut(s) 117, 190
LweI GCATC 3 cut(s) 92, 155, 190
MaeI CTAG 1 cut(s) 235
MaeII ACGT 1 cut(s) 134
MbiI CCGCTC 1 cut(s) 69
MluCI AATT 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 2 cut(s) 136, 165
MvnI CGCG 1 cut(s) 225
NlaIII CATG 1 cut(s) 122
PauI GCGCGC 1 cut(s) 223
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 68, 107, 205
PstI CTGCAG 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 133
PteI GCGCGC 1 cut(s) 223
SatI GCNGC 3 cut(s) 67, 106, 204
SetI ASST 3 cut(s) 24, 137, 198
SfaNI GCATC 3 cut(s) 92, 155, 190
SfcI CTRYAG 1 cut(s) 204
SgeI CNNG 7 cut(s) 60, 64, 126, 131, 154, 175, 199
Sse9I AATT 1 cut(s) 13
SsiI CCGC 1 cut(s) 67
SspMI CTAG 1 cut(s) 235
TaiI ACGT 1 cut(s) 137
TasI AATT 1 cut(s) 13
TauI GCSGC 1 cut(s) 69
TseI GCWGC 2 cut(s) 105, 203
Tth111I GACNNNGTC 1 cut(s) 133
XapI RAATTY 1 cut(s) 13
XspI CTAG 1 cut(s) 235
ZraI GACGTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.