Rmu_sc0002693.1_g000008

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002693.1
OG0000224
Physical Location & Seq
Forward (+)
22663 .. 24439
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002693.1_g000008.1.cds

Sequence Viewer

Length: 753 bp
atggaccgaagttggatgtacttgaaacatagatttcaaccagaagagggtcttgaaaatcctcaattacatcaagaggatattgagcccaaagtcattgcttcaaatgtcgagagtgatgaatggatagatgatggtaggcttaatgatttcatctgtgatgatgttgaagaaaacgatactgattatgatgacaatgaaaaaatcatttcaagtgatgacaatagtgattataacagtgacaaaatgtcgaaacgtcttcgttcgaacatttccggtgcccaaaaggctaatgttggtgtcactttgacaaaacggcgacgtgtacaagcaaatgaaccttcacttccaaattctttgcaagatgaacttgatgttcctgatatgcctacctctaatagaactacccaaagggctattgctagtaccattatccaaaggcctactgttgaaggtccagaaaaaaaagtgtgtggaaagacaagaggtttaaatgctgataaggtgcatgagcagcttggtactaaaatacctatgactttcaagaaagaaaatggcagacccacaggtccatatgcagaaatgtttgctaatgaaattggattcaccattcggaaccatgcacctctaaatgtgaaaaaatggaaggaagtaaaaccagaagataggacaagtttgatcaaaagaataactgtgagtgattttgttttccctaaacctgaaaacagttttctccatcatcctacgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

250

Amino Acids

28.62

Weight (kDa)

5.63

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AasI GACNNNNNNGTC 1 cut(s) 567
AccB1I GGYRCC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 4 cut(s) 20, 327, 427, 523
AfiI CCNNNNNNNGG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 8 cut(s) 25, 38, 56, 105, 170, 213, 452, 544
AhdI GACNNNNNGTC 1 cut(s) 247
AjiI CACGTC 1 cut(s) 323
AluBI AGCT 1 cut(s) 517
AluI AGCT 1 cut(s) 517
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 3 cut(s) 4, 455, 569
AsuHPI GGTGA 1 cut(s) 598
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 3 cut(s) 4, 455, 569
BaeGI GKGCMC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 526
BccI CCATC 2 cut(s) 128, 744
BceAI ACGGC 1 cut(s) 332
BclI TGATCA 1 cut(s) 678
BfaI CTAG 1 cut(s) 423
BglI GCCNNNNNGGC 1 cut(s) 287
BisI GCNGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 516
Bme18I GGWCC 3 cut(s) 4, 455, 569
BmeRI GACNNNNNGTC 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 3 cut(s) 4, 455, 569
BmiI GGNNCC 2 cut(s) 280, 617
BpiI GAAGAC 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 96
BseGI GGATG 2 cut(s) 21, 739
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 526
BshFI GGCC 1 cut(s) 442
BshNI GGYRCC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 90, 283
Bsp1407I TGTACA 1 cut(s) 325
Bsp143I GATC 1 cut(s) 678
BspANI GGCC 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 280, 617
BspT104I TTCGAA 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 325
BssMI GATC 1 cut(s) 678
Bst4CI ACNGT 4 cut(s) 239, 448, 694, 728
Bst6I CTCTTC 1 cut(s) 39
BstAUI TGTACA 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 266
BstF5I GGATG 2 cut(s) 21, 739
BstKTI GATC 1 cut(s) 681
BstMBI GATC 1 cut(s) 678
BstMWI GCNNNNNNNGC 2 cut(s) 287, 514
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 442
BtrI CACGTC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 21, 739
BtsIMutI CAGTG 1 cut(s) 244
Cfr13I GGNCC 3 cut(s) 4, 455, 569
Csp6I GTAC 4 cut(s) 19, 326, 426, 522
CviAII CATG 2 cut(s) 509, 620
CviJI RGCY 6 cut(s) 88, 142, 290, 416, 442, 517
CviKI_1 RGCY 6 cut(s) 88, 142, 290, 416, 442, 517
CviQI GTAC 4 cut(s) 19, 326, 426, 522
DpnI GATC 1 cut(s) 680
DpnII GATC 1 cut(s) 678
DraI TTTAAA 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 567
DriI GACNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 567
Eam1104I CTCTTC 1 cut(s) 39
Eam1105I GACNNNNNGTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 3 cut(s) 4, 455, 569
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 2 cut(s) 512, 623
FaiI YATR 9 cut(s) 30, 189, 234, 386, 510, 536, 574, 576, 621
FalI AAGNNNNNCTT 4 cut(s) 36, 68, 354, 386
FatI CATG 2 cut(s) 508, 619
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 1 cut(s) 515
FokI GGATG 2 cut(s) 28, 726
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 515
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 515
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 276
Hin1II CATG 2 cut(s) 512, 623
HinfI GANTC 1 cut(s) 603
HpaII CCGG 1 cut(s) 276
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 615
Hpy188III TCNNGA 6 cut(s) 53, 74, 112, 380, 458, 544
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 3 cut(s) 351, 446, 640
HpyCH4III ACNGT 4 cut(s) 239, 448, 694, 728
HpyCH4IV ACGT 2 cut(s) 256, 322
HpyCH4V TGCA 4 cut(s) 361, 508, 578, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 514
HpySE526I ACGT 2 cut(s) 256, 322
Hsp92II CATG 2 cut(s) 512, 623
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 1 cut(s) 678
LpnPI CCDG 7 cut(s) 54, 289, 393, 471, 552, 672, 732
Lsp1109I GCAGC 1 cut(s) 526
MaeI CTAG 1 cut(s) 423
MaeII ACGT 2 cut(s) 256, 322
MaeIII GTNAC 2 cut(s) 239, 301
MalI GATC 1 cut(s) 680
MboI GATC 1 cut(s) 678
MboII GAAGA 4 cut(s) 56, 182, 251, 674
MhlI GDGCHC 2 cut(s) 90, 283
MluCI AATT 3 cut(s) 65, 352, 597
MnlI CCTC 6 cut(s) 40, 70, 72, 403, 479, 636
MseI TTAA 2 cut(s) 144, 491
MspI CCGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 287, 514
NdeI CATATG 1 cut(s) 574
NdeII GATC 1 cut(s) 678
NlaIII CATG 2 cut(s) 512, 623
NlaIV GGNNCC 2 cut(s) 280, 617
NmuCI GTSAC 2 cut(s) 239, 301
NspV TTCGAA 1 cut(s) 266
PceI AGGCCT 1 cut(s) 442
PfeI GAWTC 1 cut(s) 603
PkrI GCNGC 1 cut(s) 516
PsiI TTATAA 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 280, 617
PspPI GGNCC 3 cut(s) 4, 455, 569
RsaI GTAC 4 cut(s) 20, 327, 427, 523
RsaNI GTAC 4 cut(s) 19, 326, 426, 522
SaqAI TTAA 2 cut(s) 144, 491
SatI GCNGC 1 cut(s) 515
Sau3AI GATC 1 cut(s) 678
Sau96I GGNCC 3 cut(s) 4, 455, 569
SduI GDGCHC 2 cut(s) 90, 283
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 3 cut(s) 4, 455, 569
Sse9I AATT 3 cut(s) 65, 352, 597
SseBI AGGCCT 1 cut(s) 442
SspMI CTAG 1 cut(s) 423
StuI AGGCCT 1 cut(s) 442
TaaI ACNGT 4 cut(s) 239, 448, 694, 728
TaiI ACGT 2 cut(s) 259, 325
TaqI TCGA 3 cut(s) 111, 251, 266
TaqII GACCGA 1 cut(s) 21
TasI AATT 3 cut(s) 65, 352, 597
TatI WGTACW 2 cut(s) 18, 325
TfiI GAWTC 1 cut(s) 603
Tru1I TTAA 2 cut(s) 144, 491
Tru9I TTAA 2 cut(s) 144, 491
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 239, 301
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 2 cut(s) 239, 301
TspDTI ATGAA 6 cut(s) 135, 142, 213, 351, 381, 609
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 3 cut(s) 4, 455, 569
XapI RAATTY 1 cut(s) 352
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.