RLG00000034592

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000224
Physical Location & Seq
Reverse (-)
45564161 .. 45565439
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034592

Sequence Viewer

Length: 723 bp
ATGCGCCGTTCCAATGTGTCTAACATCCAAAAGCCTACTACTGGTATTGCACCGAGTAAACGCTTTCGTGTAGCAGCTACTGATCTGCCATGCCCAAATGGGTCCCGTTCTACTTCAGGTAGTGCAATGAGTAAATGCTCTTGTGTGCAAACTACTGATCAGCCATGTCAAAATTCTGTAGAAGATGGACTCAATTCTGCTATTGGTACCACTACAAAACGAACTACTACTGGAGTCAGAATTAGTTCACGTCTTCAACATCAAATTGTTAAAGATCAGCTATTGATAAATGTTACAACTGAAGAGCGAAATGATAATGTGATGTCAGCCAATAATCAAGAGCCTCCTACAGGTCCAACAACAAAGGTACGGGGAAAGACAAGAGAAGTGAATGCAGATAAGGTGCTTTCTCAATTGAATGCTAAAATACTTGTCACTCTGACTGAACAAAATGGCAGGCCTACAGCTCGAAACCATGCCCCACTAAATGTGGAAGAATGGAGGAAGATTCTGAAAACTGAAGTGGATAAGTTGATTAAAAGAATAACGAACAAGTTTGACATTGACATGTCTCTTCCTTGGGTTAAGAGATATGGAATTACAACATGTCAGACTGTATTTTGTAATTTTCGTTATAAGTTGAAGAAACATTTTGAGAAATTTTTAATAATCGAGGAAGCAATTGAAAACAAACACGATGATGTCAAGACTCAGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

241

Amino Acids

27.06

Weight (kDa)

9.57

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AcsI RAATTY 2 cut(s) 172, 659
AcuI CTGAAG 3 cut(s) 99, 321, 540
AfaI GTAC 2 cut(s) 208, 369
AfiI CCNNNNNNNGG 2 cut(s) 41, 350
AflIII ACRYGT 2 cut(s) 567, 605
AgsI TTSAA 4 cut(s) 257, 418, 643, 686
AjiI CACGTC 1 cut(s) 251
AluBI AGCT 3 cut(s) 77, 280, 467
AluI AGCT 3 cut(s) 77, 280, 467
Alw26I GTCTC 1 cut(s) 576
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 172, 659
Asp700I GAANNNNTTC 1 cut(s) 244
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 102, 353
AvaII GGWCC 2 cut(s) 102, 353
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 179
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 576
BfmI CTRYAG 3 cut(s) 177, 348, 462
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 2 cut(s) 102, 353
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 102, 353
BmiI GGNNCC 3 cut(s) 103, 104, 208
BpiI GAAGAC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 578
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 350
Bse1I ACTGG 2 cut(s) 46, 235
Bse3DI GCAATG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 578
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 41, 350
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 46, 235
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 1 cut(s) 460
BshNI GGYRCC 1 cut(s) 206
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 41, 350
BsmAI GTCTC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 88
BsmI GAATGC 2 cut(s) 397, 424
BsnI GGCC 1 cut(s) 460
Bsp143I GATC 3 cut(s) 82, 157, 274
BspANI GGCC 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 103, 104, 208
BspQI GCTCTTC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 2 cut(s) 46, 235
BssECI CCNNGG 1 cut(s) 578
BssMI GATC 3 cut(s) 82, 157, 274
BssT1I CCWWGG 1 cut(s) 578
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 297, 579
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 1 cut(s) 711
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 85, 160, 277
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 3 cut(s) 82, 157, 274
BstNSI RCATGY 2 cut(s) 571, 609
BstSFI CTRYAG 3 cut(s) 177, 348, 462
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 460
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 458
CaiI CAGNNNCTG 1 cut(s) 80
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 102, 353
Csp6I GTAC 2 cut(s) 207, 368
CviAII CATG 5 cut(s) 90, 165, 476, 568, 606
CviJI RGCY 8 cut(s) 34, 77, 163, 280, 329, 343, 460, 467
CviKI_1 RGCY 8 cut(s) 34, 77, 163, 280, 329, 343, 460, 467
CviQI GTAC 2 cut(s) 207, 368
DdeI CTNAG 1 cut(s) 711
DpnI GATC 3 cut(s) 84, 159, 276
DpnII GATC 3 cut(s) 82, 157, 274
Eam1104I CTCTTC 2 cut(s) 297, 579
EarI CTCTTC 2 cut(s) 297, 579
Eco130I CCWWGG 1 cut(s) 578
Eco147I AGGCCT 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 102, 353
Eco57I CTGAAG 3 cut(s) 99, 321, 540
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 578
FaeI CATG 5 cut(s) 93, 168, 479, 571, 609
FaiI YATR 7 cut(s) 91, 166, 477, 569, 594, 607, 636
FaqI GGGAC 1 cut(s) 88
FatI CATG 5 cut(s) 89, 164, 475, 567, 605
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 75
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 460
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 93, 168, 479, 571, 609
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 4 cut(s) 189, 234, 508, 709
Hpy166II GTNNAC 2 cut(s) 59, 248
Hpy188I TCNGA 4 cut(s) 239, 441, 513, 612
Hpy188III TCNNGA 3 cut(s) 338, 706, 713
Hpy8I GTNNAC 2 cut(s) 59, 248
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 50, 125, 148, 395
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 5 cut(s) 93, 168, 479, 571, 609
HspAI GCGC 1 cut(s) 4
KflI GGGWCCC 1 cut(s) 102
KpnI GGTACC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 82, 157, 274
LguI GCTCTTC 1 cut(s) 297
LpnPI CCDG 6 cut(s) 27, 102, 216, 336, 442, 698
Lsp1109I GCAGC 1 cut(s) 86
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 292, 433
MalI GATC 3 cut(s) 84, 159, 276
MboI GATC 3 cut(s) 82, 157, 274
MboII GAAGA 7 cut(s) 194, 245, 314, 506, 517, 566, 655
MfeI CAATTG 2 cut(s) 413, 681
MluCI AATT 9 cut(s) 172, 193, 240, 264, 413, 597, 625, 659, 681
MlyI GAGTC 3 cut(s) 183, 243, 703
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 3 cut(s) 354, 495, 667
MroXI GAANNNNTTC 1 cut(s) 244
MseI TTAA 4 cut(s) 270, 537, 585, 665
MslI CAYNNNNRTG 2 cut(s) 566, 699
MunI CAATTG 2 cut(s) 413, 681
Mva1269I GAATGC 2 cut(s) 397, 424
NdeII GATC 3 cut(s) 82, 157, 274
NlaIII CATG 5 cut(s) 93, 168, 479, 571, 609
NlaIV GGNNCC 3 cut(s) 103, 104, 208
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 2 cut(s) 571, 609
PceI AGGCCT 1 cut(s) 460
PciI ACATGT 2 cut(s) 567, 605
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 2 cut(s) 397, 424
PdmI GAANNNNTTC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 508
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 3 cut(s) 183, 242, 703
PpsI GAGTC 3 cut(s) 183, 242, 703
PpuMI RGGWCCY 1 cut(s) 102
PscI ACATGT 2 cut(s) 567, 605
PsiI TTATAA 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 103, 104, 208
PspPI GGNCC 2 cut(s) 102, 353
PspPPI RGGWCCY 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 208, 369
RsaNI GTAC 2 cut(s) 207, 368
RseI CAYNNNNRTG 2 cut(s) 566, 699
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 4 cut(s) 270, 537, 585, 665
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 3 cut(s) 82, 157, 274
Sau96I GGNCC 2 cut(s) 102, 353
SchI GAGTC 3 cut(s) 183, 243, 703
SetI ASST 8 cut(s) 79, 121, 253, 282, 355, 369, 405, 469
SfcI CTRYAG 3 cut(s) 177, 348, 462
SinI GGWCC 2 cut(s) 102, 353
SmiMI CAYNNNNRTG 2 cut(s) 566, 699
Sse9I AATT 9 cut(s) 172, 193, 240, 264, 413, 597, 625, 659, 681
SseBI AGGCCT 1 cut(s) 460
StuI AGGCCT 1 cut(s) 460
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 253
TaqI TCGA 2 cut(s) 469, 672
TasI AATT 9 cut(s) 172, 193, 240, 264, 413, 597, 625, 659, 681
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 4 cut(s) 270, 537, 585, 665
Tru9I TTAA 4 cut(s) 270, 537, 585, 665
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 433
VpaK11BI GGWCC 2 cut(s) 102, 353
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 2 cut(s) 172, 659
XceI RCATGY 2 cut(s) 571, 609
XmnI GAANNNNTTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.