FvH4_2g08145

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000224
Physical Location & Seq
Reverse (-)
7085009 .. 7086031
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08145.t1

Sequence Viewer

Length: 696 bp
ATGATCGCTATAACTGATGAGCTCAATGATATTGTAATGTTAGCAAATTTACAAAGGTCCACTACAGGTCGAGACAGAGAAGCGAGACGAAGGACCAGACAAGTGAATATCAAGAAGGTGCATTCCCGGTTGAACCATAAAATCCCTGTCACTTTGCTACAAGATACCGGAAGACCCACAGGTCCATATGCAACATTGTTTGTGAATGATATCAACTTAATAGTTAGGAAGCTTGCACCGTTGAATGTGGAAAAATGGGCTGACATTGAATCAACTGATGTGGCTAAGATGATTGAAAGAATAACTAGCAAGTTCGACATTAACATTTCTCTTCCTTGGGTCAAGAGATATGCAATCAAAATGTTTAGGGCGGCATTTTTAAAATTTCGTTACGGGCTAAAGAAGCATTTTGATAAATTCTCAACAGTTGAAGAAGCACTAGAAAACAAGCCTGAAGCGGTTAAAACTCAAGAAGAATGGGATTTCCTTTGTACTCGTTTTTCAAGTCAAGAGTTACAGATCAATTCCTTAAATGCTAGAAAGAAACTGCATTTGACACATCATAATGCTTGGTCGAAGTATTTTATGGCCTATGAAGGTAATGAGACTGTCACACTTGAAGGATTGAAGGAGCATGCCAAAAGATTGGAGGAACTGAATGGGGATGTCGAAAGATTTCTGAAATTCATAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

232

Amino Acids

27.03

Weight (kDa)

9.58

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 180
AciI CCGC 2 cut(s) 371, 458
AcsI RAATTY 4 cut(s) 46, 383, 416, 683
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 1 cut(s) 493
AgsI TTSAA 8 cut(s) 133, 244, 269, 296, 431, 504, 620, 628
AluBI AGCT 2 cut(s) 22, 232
AluI AGCT 2 cut(s) 22, 232
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 66, 79, 599
AoxI GGCC 1 cut(s) 588
ApoI RAATTY 4 cut(s) 46, 383, 416, 683
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 3 cut(s) 57, 93, 182
AsuC2I CCSGG 1 cut(s) 127
AvaII GGWCC 3 cut(s) 57, 93, 182
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 24
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 3 cut(s) 66, 79, 599
BfaI CTAG 3 cut(s) 306, 440, 537
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 3 cut(s) 57, 93, 182
BmgT120I GGNCC 3 cut(s) 57, 93, 182
BmrFI CCNGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 670
BshFI GGCC 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 127, 168
BsmAI GTCTC 3 cut(s) 66, 79, 599
BsmBI CGTCTC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 590
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 2 cut(s) 3, 519
BspACI CCGC 2 cut(s) 371, 458
BspANI GGCC 1 cut(s) 590
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 3, 519
BssT1I CCWWGG 1 cut(s) 335
Bst4CI ACNGT 3 cut(s) 240, 427, 610
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 234, 636
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 670
BstKTI GATC 2 cut(s) 6, 522
BstMAI GTCTC 3 cut(s) 66, 79, 599
BstMBI GATC 2 cut(s) 3, 519
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 646
BsuRI GGCC 1 cut(s) 590
BtsCI GGATG 1 cut(s) 670
Cac8I GCNNGC 2 cut(s) 234, 636
Cfr13I GGNCC 3 cut(s) 57, 93, 182
Csp6I GTAC 1 cut(s) 492
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 1 cut(s) 635
CviJI RGCY 7 cut(s) 22, 232, 260, 284, 397, 451, 590
CviKI_1 RGCY 7 cut(s) 22, 232, 260, 284, 397, 451, 590
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 1 cut(s) 285
DpnI GATC 2 cut(s) 5, 521
DpnII GATC 2 cut(s) 3, 519
DraI TTTAAA 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 180
DseDI GACNNNNNNGTC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 24
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 3 cut(s) 57, 93, 182
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 335
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 1 cut(s) 638
FatI CATG 1 cut(s) 634
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 3 cut(s) 306, 440, 537
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 1 cut(s) 590
HapII CCGG 2 cut(s) 127, 168
Hin1II CATG 1 cut(s) 638
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 269
HpaII CCGG 2 cut(s) 127, 168
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 681
Hpy188III TCNNGA 5 cut(s) 71, 112, 343, 470, 509
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 5 cut(s) 84, 109, 590, 614, 622
HpyCH4III ACNGT 3 cut(s) 240, 427, 610
HpyCH4V TGCA 5 cut(s) 121, 191, 236, 353, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 1 cut(s) 638
Kzo9I GATC 2 cut(s) 3, 519
LmnI GCTCC 1 cut(s) 631
LpnPI CCDG 7 cut(s) 51, 109, 140, 159, 165, 181, 465
MaeI CTAG 3 cut(s) 306, 440, 537
MaeIII GTNAC 4 cut(s) 148, 389, 513, 610
MalI GATC 2 cut(s) 5, 521
MboI GATC 2 cut(s) 3, 519
MboII GAAGA 4 cut(s) 183, 323, 443, 485
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 5 cut(s) 46, 383, 416, 523, 683
MnlI CCTC 1 cut(s) 643
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 5 cut(s) 218, 321, 380, 462, 530
MslI CAYNNNNRTG 1 cut(s) 564
MspI CCGG 2 cut(s) 127, 168
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 403
NciI CCSGG 1 cut(s) 127
NdeI CATATG 1 cut(s) 187
NdeII GATC 2 cut(s) 3, 519
NlaIII CATG 1 cut(s) 638
NmuCI GTSAC 2 cut(s) 148, 610
NspI RCATGY 1 cut(s) 638
PaeI GCATGC 1 cut(s) 638
PctI GAATGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 24
PspPI GGNCC 3 cut(s) 57, 93, 182
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 5 cut(s) 218, 321, 380, 462, 530
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 2 cut(s) 3, 519
Sau96I GGNCC 3 cut(s) 57, 93, 182
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 1 cut(s) 24
SetI ASST 7 cut(s) 24, 59, 70, 120, 184, 234, 601
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 3 cut(s) 57, 93, 182
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
SphI GCATGC 1 cut(s) 638
Sse9I AATT 5 cut(s) 46, 383, 416, 523, 683
SsiI CCGC 2 cut(s) 371, 458
SspMI CTAG 3 cut(s) 306, 440, 537
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 3 cut(s) 240, 427, 610
TaqI TCGA 4 cut(s) 70, 315, 575, 669
TasI AATT 5 cut(s) 46, 383, 416, 523, 683
TatI WGTACW 1 cut(s) 491
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 5 cut(s) 218, 321, 380, 462, 530
Tru9I TTAA 5 cut(s) 218, 321, 380, 462, 530
TseFI GTSAC 2 cut(s) 148, 610
Tsp45I GTSAC 2 cut(s) 148, 610
TspDTI ATGAA 2 cut(s) 609, 676
VpaK11BI GGWCC 3 cut(s) 57, 93, 182
XapI RAATTY 4 cut(s) 46, 383, 416, 683
XceI RCATGY 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 3 cut(s) 306, 440, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.