RchiOBHm_Chr1g0345631

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000224
Physical Location & Seq
Forward (+)
37925410 .. 37929569
4160 bp
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UTR
Exon/CDS
Intron
PRQ57195

Sequence Viewer

Length: 429 bp
ATGTTTGCTAATGAAATTGGATTCACCATTCGGAACCATGCACCTCTAAATGTGAAAAAATGGAAGGAAGTAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACTACTAAGTACGACATTGACATGTCTCTATCTTGGGTTAAGAGATATGTGAATAAATCTTTTGGAACAGTGTTTGCTAACTTCCGTTATAAGTTAAAGAAGCATTTTGAGCAATTCTCAACAAAAGAGGAAGCATTAGAAAATAAACACAAAGATGTTAAAACTGAAGAAGAATGGGCTTTTTTGTGCACTTATTTTTTTAGTGAAGATTTTCAGGTACGTACAAGATTGTTTGTTTATTCTTTTTATTTTTGCTATAGTTGCTTTTCAAATACTACACTAATTTTGTTAATAATTTCTACATTTCAGTTTGCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

142

Amino Acids

17.19

Weight (kDa)

9.22

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 3 cut(s) 119, 327, 331
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 1 cut(s) 378
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 295
ApaLI GTGCAC 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 299
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 35
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BsaAI YACGTR 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 35
BssMI GATC 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 329
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 217, 369
BstNSI RCATGY 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 299
BstSNI TACGTA 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 183
Csp6I GTAC 3 cut(s) 118, 326, 330
CviAII CATG 2 cut(s) 38, 130
CviJI RGCY 1 cut(s) 287
CviKI_1 RGCY 1 cut(s) 287
CviQI GTAC 3 cut(s) 118, 326, 330
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eco105I TACGTA 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 294
FaeI CATG 2 cut(s) 41, 133
FaiI YATR 5 cut(s) 39, 131, 156, 198, 366
FatI CATG 2 cut(s) 37, 129
FbaI TGATCA 1 cut(s) 96
Hin1II CATG 2 cut(s) 41, 133
HinfI GANTC 1 cut(s) 21
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 41, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 369
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 2 cut(s) 41, 133
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 2 cut(s) 90, 308
MaeII ACGT 1 cut(s) 328
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 4 cut(s) 92, 287, 290, 326
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 4 cut(s) 15, 221, 390, 402
MnlI CCTC 2 cut(s) 54, 229
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 5 cut(s) 147, 203, 267, 398, 427
MslI CAYNNNNRTG 2 cut(s) 128, 261
MwoI GCNNNNNNNGC 2 cut(s) 217, 369
NdeII GATC 1 cut(s) 96
NlaIII CATG 2 cut(s) 41, 133
NlaIV GGNNCC 1 cut(s) 35
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 329
PscI ACATGT 1 cut(s) 129
PsiI TTATAA 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 35
RsaI GTAC 3 cut(s) 119, 327, 331
RsaNI GTAC 3 cut(s) 118, 326, 330
RseI CAYNNNNRTG 2 cut(s) 128, 261
SaqAI TTAA 5 cut(s) 147, 203, 267, 398, 427
Sau3AI GATC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 299
SetI ASST 3 cut(s) 46, 327, 331
SfcI CTRYAG 1 cut(s) 364
SgeI CNNG 7 cut(s) 50, 89, 102, 142, 153, 335, 345
SmiMI CAYNNNNRTG 2 cut(s) 128, 261
SnaBI TACGTA 1 cut(s) 329
Sse9I AATT 4 cut(s) 15, 221, 390, 402
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 331
TasI AATT 4 cut(s) 15, 221, 390, 402
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 5 cut(s) 147, 203, 267, 398, 427
Tru9I TTAA 5 cut(s) 147, 203, 267, 398, 427
TscAI CASTG 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 183
VneI GTGCAC 1 cut(s) 295
XceI RCATGY 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.