Rroxscaffold_7G00179770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000224
Physical Location & Seq
Reverse (-)
19260743 .. 19267541
6799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179770.1

Sequence Viewer

Length: 588 bp
ATGATGAAATTTGTGCAATTAAAAGTCCTCGGAGTCAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCTTAGACCTTCACCATTAAGGGTCTCTCATTCGTCGATAAAAGAGTTTCAAGAACAGCTTCAAGATTCCCAACACCTTGTGAGGACTCAACAACAAAAGATTGATGCACAAAATGAGGTGATACAAAGATTGGAGGAGCAAGCCAAAAATTTTGAGGAGTTCATGGCTAACTCTTCCAGGCAACATCCATCAAAATATAGTATCTATCGCGATGAAATCTGCTGTGGCGAAGTTAAGTTGTTTATAAAGGATATGGTTTCTCTCTCCGGCAGCCGCTCCCTAGGGTTTCTAGGCGGCGTCTCGGCACCTTGGTTTTGGATTGGCCTCGGGCTTTTCTCGGCCTATCGTCTGCCGTGGCGGCGGTGTTGTTCGACATTCTTTGATTTGGGTGGGTGGTTGCTTACTCTATCTCCTCTCGCATCTCTCTCCATGGAGATGTGTTTGATTTCCCGTATTAGACCTGGTTTTCAAAACATGGGTGTGGGTGTCTCCGGAATGAGGACGAGCGGGGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.04

Weight (kDa)

9.23

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 373
AccBSI CCGCTC 2 cut(s) 345, 576
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 560
AciI CCGC 5 cut(s) 343, 363, 427, 430, 576
AcsI RAATTY 2 cut(s) 8, 217
AcyI GRCGYC 1 cut(s) 366
AdeI CACNNNGTG 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 567
AgsI TTSAA 3 cut(s) 119, 131, 539
AjnI CCWGG 2 cut(s) 245, 529
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 3 cut(s) 97, 373, 562
Ama87I CYCGRG 1 cut(s) 395
Aor13HI TCCGGA 1 cut(s) 560
AoxI GGCC 3 cut(s) 67, 391, 408
ApeKI GCWGC 1 cut(s) 339
ApoI RAATTY 2 cut(s) 8, 217
Asp700I GAANNNNTTC 1 cut(s) 126
AspA2I CCTAGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 72, 199
AvaI CYCGRG 1 cut(s) 395
AvrII CCTAGG 1 cut(s) 349
BanI GGYRCC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 351
BccI CCATC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 2 cut(s) 247, 531
BcoDI GTCTC 3 cut(s) 97, 373, 562
BfaI CTAG 2 cut(s) 350, 359
BglI GCCNNNNNGGC 1 cut(s) 427
BisI GCNGC 4 cut(s) 340, 343, 364, 428
BlnI CCTAGG 1 cut(s) 349
BlsI GCNGC 4 cut(s) 341, 344, 365, 429
Bme1390I CCNGG 2 cut(s) 247, 531
BmeT110I CYCGRG 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 2 cut(s) 247, 531
BmsI GCATC 2 cut(s) 163, 497
BsaHI GRCGYC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 6 cut(s) 28, 349, 377, 394, 422, 498
BsaWI WCCGGW 1 cut(s) 560
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 567
BseAI TCCGGA 1 cut(s) 560
BseBI CCWGG 2 cut(s) 247, 531
BseDI CCNNGG 6 cut(s) 28, 349, 377, 394, 422, 498
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 567
BseRI GAGGAG 3 cut(s) 218, 239, 471
BseXI GCAGC 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 3 cut(s) 69, 393, 410
BshNI GGYRCC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 2 cut(s) 336, 561
BslI CCNNNNNNNGG 1 cut(s) 567
BsmAI GTCTC 3 cut(s) 97, 373, 562
BsmBI CGTCTC 1 cut(s) 373
BsnI GGCC 3 cut(s) 69, 393, 410
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 395
Bsp13I TCCGGA 1 cut(s) 560
Bsp19I CCATGG 1 cut(s) 498
Bsp68I TCGCGA 1 cut(s) 279
BspACI CCGC 5 cut(s) 343, 363, 427, 430, 576
BspANI GGCC 3 cut(s) 69, 393, 410
BspEI TCCGGA 1 cut(s) 560
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 2 cut(s) 345, 576
BssECI CCNNGG 6 cut(s) 28, 349, 377, 394, 422, 498
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 3 cut(s) 349, 377, 498
Bst2UI CCWGG 2 cut(s) 247, 531
Bst6I CTCTTC 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 2 cut(s) 422, 498
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 279
BstMAI GTCTC 3 cut(s) 97, 373, 562
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNI CCWGG 2 cut(s) 247, 531
BstSCI CCNGG 2 cut(s) 245, 529
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 351
BsuRI GGCC 3 cut(s) 69, 393, 410
BtgI CCRYGG 2 cut(s) 422, 498
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 253
BtuMI TCGCGA 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 210
CseI GACGC 1 cut(s) 355
CsiI ACCWGGT 1 cut(s) 529
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviAII CATG 3 cut(s) 232, 499, 544
CviJI RGCY 9 cut(s) 45, 69, 127, 212, 236, 342, 393, 400, 410
CviKI_1 RGCY 9 cut(s) 45, 69, 127, 212, 236, 342, 393, 400, 410
DdeI CTNAG 1 cut(s) 71
DraIII CACNNNGTG 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 3 cut(s) 349, 377, 498
Eco31I GGTCTC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 245, 529
EcoT14I CCWWGG 3 cut(s) 349, 377, 498
ErhI CCWWGG 3 cut(s) 349, 377, 498
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 3 cut(s) 235, 502, 547
FaiI YATR 6 cut(s) 233, 267, 314, 323, 500, 545
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 3 cut(s) 231, 498, 543
FauI CCCGC 1 cut(s) 569
Fnu4HI GCNGC 4 cut(s) 340, 343, 364, 428
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 340, 343, 364, 428
FspBI CTAG 2 cut(s) 350, 359
GluI GCNGC 4 cut(s) 340, 343, 364, 428
HaeIII GGCC 3 cut(s) 69, 393, 410
HapII CCGG 2 cut(s) 336, 561
HgaI GACGC 1 cut(s) 355
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 3 cut(s) 235, 502, 547
HinfI GANTC 3 cut(s) 33, 134, 154
HpaII CCGG 2 cut(s) 336, 561
HphI GGTGA 2 cut(s) 72, 199
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 4 cut(s) 119, 131, 278, 561
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 16, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 3 cut(s) 235, 502, 547
Kpn2I TCCGGA 1 cut(s) 560
LmnI GCTCC 2 cut(s) 205, 350
LpnPI CCDG 7 cut(s) 27, 232, 259, 349, 516, 543, 574
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 2 cut(s) 163, 497
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 2 cut(s) 350, 359
MbiI CCGCTC 2 cut(s) 345, 576
MboII GAAGA 1 cut(s) 234
MluCI AATT 3 cut(s) 8, 17, 217
MlyI GAGTC 2 cut(s) 42, 148
MnlI CCTC 8 cut(s) 38, 144, 178, 196, 217, 404, 492, 561
MroI TCCGGA 1 cut(s) 560
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 4 cut(s) 20, 86, 303, 586
MslI CAYNNNNRTG 2 cut(s) 503, 548
MspI CCGG 2 cut(s) 336, 561
MspR9I CCNGG 2 cut(s) 247, 531
MvaI CCWGG 2 cut(s) 247, 531
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 427
NcoI CCATGG 1 cut(s) 498
NlaIII CATG 3 cut(s) 235, 502, 547
NlaIV GGNNCC 1 cut(s) 375
NmeAIII GCCGAG 2 cut(s) 350, 386
NruI TCGCGA 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 4 cut(s) 341, 344, 365, 429
PleI GAGTC 2 cut(s) 41, 148
PpsI GAGTC 2 cut(s) 41, 148
PsiI TTATAA 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 245, 529
PspGI CCWGG 2 cut(s) 245, 529
PspN4I GGNNCC 1 cut(s) 375
RruI TCGCGA 1 cut(s) 279
RseI CAYNNNNRTG 2 cut(s) 503, 548
SaqAI TTAA 4 cut(s) 20, 86, 303, 586
SatI GCNGC 4 cut(s) 340, 343, 364, 428
SchI GAGTC 2 cut(s) 42, 148
ScrFI CCNGG 2 cut(s) 247, 531
SetI ASST 6 cut(s) 79, 129, 147, 189, 379, 532
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 2 cut(s) 163, 497
SmiMI CAYNNNNRTG 2 cut(s) 503, 548
Sse9I AATT 3 cut(s) 8, 17, 217
SsiI CCGC 5 cut(s) 343, 363, 427, 430, 576
SspMI CTAG 2 cut(s) 350, 359
StyD4I CCNGG 2 cut(s) 245, 529
StyI CCWWGG 3 cut(s) 349, 377, 498
TaqI TCGA 2 cut(s) 104, 440
TasI AATT 3 cut(s) 8, 17, 217
TauI GCSGC 3 cut(s) 345, 366, 430
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 4 cut(s) 20, 86, 303, 586
Tru9I TTAA 4 cut(s) 20, 86, 303, 586
TseI GCWGC 1 cut(s) 339
TspDTI ATGAA 3 cut(s) 20, 220, 297
XapI RAATTY 2 cut(s) 8, 217
XmaJI CCTAGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 2 cut(s) 350, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.