Rroxscaffold_2G00128850

Conserved gene of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000224
Physical Location & Seq
Reverse (-)
64601207 .. 64602307
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128850.1

Sequence Viewer

Length: 357 bp
ATGATAGATGATGAAATTTGTGCAAAAGTCTTCGGAGTCAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCCTAGACCTCCACCATCAAGGGTTTGTCATTCGTCAATAAATGAAATGTCTGAAAAGAACAAAGAGTTGCAAGAACAGCTTCAAGAGGCCCAACACCTTGTAGGGACTCAACAACAAAAGATTGATGCACAAAATGAGGTGATCCAAATATTAGAGGAGCAAGCCGAAAAGTTTGAGGACGTGATTCTCCCCCACGAAGGCGACGAAAATCGTGGCGGCCGACCCAACTCGGTTTTCTCGATTTCGGCGATGGTGGAGGTGAAGCCAATCTTTTTGAGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

118

Amino Acids

13.14

Weight (kDa)

4.91

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 208
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 155
AjiI CACGTC 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 2 cut(s) 151, 351
AluI AGCT 2 cut(s) 151, 351
Alw21I GWGCWC 1 cut(s) 353
AlwI GGATC 1 cut(s) 208
AoxI GGCC 3 cut(s) 70, 159, 289
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 2 cut(s) 71, 160
AsuHPI GGTGA 2 cut(s) 223, 343
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 353
BccI CCATC 2 cut(s) 94, 316
BfaI CTAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 71, 160
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 242
BseX3I CGGCCG 1 cut(s) 289
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 3 cut(s) 72, 161, 291
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 353
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 3 cut(s) 72, 161, 291
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 1 cut(s) 288
BspANI GGCC 3 cut(s) 72, 161, 291
BspPI GGATC 1 cut(s) 208
BssMI GATC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 22
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 3 cut(s) 72, 161, 291
BtgZI GCGATG 1 cut(s) 335
BtrI CACGTC 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 234
Cfr13I GGNCC 2 cut(s) 71, 160
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviJI RGCY 8 cut(s) 48, 72, 151, 161, 236, 291, 337, 351
CviKI_1 RGCY 8 cut(s) 48, 72, 151, 161, 236, 291, 337, 351
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 351
EclXI CGGCCG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 353
Eco52I CGGCCG 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 353
FaiI YATR 1 cut(s) 355
FalI AAGNNNNNCTT 3 cut(s) 135, 167, 326
FaqI GGGAC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 289
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 3 cut(s) 72, 161, 291
HinfI GANTC 3 cut(s) 36, 178, 256
HphI GGTGA 2 cut(s) 223, 343
Hpy188I TCNGA 2 cut(s) 35, 124
Hpy188III TCNNGA 2 cut(s) 155, 310
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 23, 142, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 1 cut(s) 252
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 1 cut(s) 30
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 252
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 45, 172
MnlI CCTC 6 cut(s) 90, 151, 202, 220, 241, 322
MroXI GAANNNNTTC 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 4 cut(s) 273, 289, 308, 317
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 290
PleI GAGTC 2 cut(s) 44, 172
PpsI GAGTC 2 cut(s) 44, 172
Psp124BI GAGCTC 1 cut(s) 353
PspPI GGNCC 2 cut(s) 71, 160
SacI GAGCTC 1 cut(s) 353
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 71, 160
SchI GAGTC 2 cut(s) 45, 172
SduI GDGCHC 1 cut(s) 353
SetI ASST 7 cut(s) 82, 153, 171, 213, 255, 333, 353
SfaNI GCATC 1 cut(s) 187
Sse9I AATT 1 cut(s) 15
SsiI CCGC 1 cut(s) 288
SspI AATATT 1 cut(s) 222
SspMI CTAG 1 cut(s) 75
SstI GAGCTC 1 cut(s) 353
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 311
TasI AATT 1 cut(s) 15
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 27, 129
XapI RAATTY 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.