TdcA1-ORF2 protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 911 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 491, 935 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 156 |
| AccBSI | CCGCTC | 1 cut(s) | 89 |
| AccI | GTMKAC | 1 cut(s) | 822 |
| AciI | CCGC | 3 cut(s) | 89, 391, 831 |
| AclWI | GGATC | 1 cut(s) | 41 |
| AcoI | YGGCCR | 1 cut(s) | 832 |
| AcsI | RAATTY | 3 cut(s) | 41, 354, 609 |
| AfaI | GTAC | 2 cut(s) | 261, 962 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 156, 269, 846 |
| AflII | CTTAAG | 1 cut(s) | 596 |
| AflIII | ACRYGT | 1 cut(s) | 313 |
| AgsI | TTSAA | 6 cut(s) | 41, 70, 590, 815, 922, 990 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| AluBI | AGCT | 6 cut(s) | 138, 198, 217, 601, 918, 982 |
| AluI | AGCT | 6 cut(s) | 138, 198, 217, 601, 918, 982 |
| Alw26I | GTCTC | 1 cut(s) | 314 |
| AlwI | GGATC | 1 cut(s) | 41 |
| AoxI | GGCC | 1 cut(s) | 832 |
| ApeKI | GCWGC | 1 cut(s) | 480 |
| ApoI | RAATTY | 3 cut(s) | 41, 354, 609 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 199 |
| AspS9I | GGNCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| AsuC2I | CCSGG | 1 cut(s) | 51 |
| AsuHPI | GGTGA | 3 cut(s) | 48, 89, 287 |
| AsuII | TTCGAA | 1 cut(s) | 203 |
| AvaII | GGWCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 674, 707 |
| BanII | GRGCYC | 2 cut(s) | 163, 729 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 666, 698 |
| BbsI | GAAGAC | 1 cut(s) | 681 |
| BbvI | GCAGC | 1 cut(s) | 492 |
| BccI | CCATC | 4 cut(s) | 267, 306, 669, 777 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BclI | TGATCA | 3 cut(s) | 516, 739, 756 |
| BcnI | CCSGG | 1 cut(s) | 51 |
| BcoDI | GTCTC | 1 cut(s) | 314 |
| BfrI | CTTAAG | 1 cut(s) | 596 |
| BisI | GCNGC | 3 cut(s) | 90, 481, 832 |
| BlsI | GCNGC | 3 cut(s) | 91, 482, 833 |
| Bme1390I | CCNGG | 2 cut(s) | 51, 450 |
| Bme18I | GGWCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| BmgT120I | GGNCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| BmiI | GGNNCC | 3 cut(s) | 120, 148, 784 |
| BmrFI | CCNGG | 2 cut(s) | 51, 450 |
| BmrI | ACTGGG | 1 cut(s) | 628 |
| BmsI | GCATC | 2 cut(s) | 346, 790 |
| BmuI | ACTGGG | 1 cut(s) | 628 |
| BpiI | GAAGAC | 1 cut(s) | 681 |
| Bpu14I | TTCGAA | 1 cut(s) | 203 |
| BpuMI | CCSGG | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 2 cut(s) | 122, 686 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 156, 269, 846 |
| Bse118I | RCCGGY | 1 cut(s) | 839 |
| Bse1I | ACTGG | 2 cut(s) | 463, 623 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 2 cut(s) | 122, 686 |
| BseGI | GGATG | 4 cut(s) | 278, 337, 765, 958 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 156, 269, 846 |
| BseMII | CTCAG | 2 cut(s) | 339, 707 |
| BseNI | ACTGG | 2 cut(s) | 463, 623 |
| BseXI | GCAGC | 1 cut(s) | 492 |
| Bsh1285I | CGRYCG | 1 cut(s) | 976 |
| BshFI | GGCC | 1 cut(s) | 834 |
| BsiEI | CGRYCG | 1 cut(s) | 976 |
| BsiSI | CCGG | 2 cut(s) | 50, 840 |
| BslFI | GGGAC | 2 cut(s) | 160, 479 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 156, 269, 846 |
| BsmAI | GTCTC | 1 cut(s) | 314 |
| BsmFI | GGGAC | 2 cut(s) | 160, 479 |
| BsmI | GAATGC | 1 cut(s) | 244 |
| BsnI | GGCC | 1 cut(s) | 834 |
| Bsp119I | TTCGAA | 1 cut(s) | 203 |
| Bsp1286I | GDGCHC | 2 cut(s) | 163, 729 |
| Bsp143I | GATC | 4 cut(s) | 46, 516, 739, 756 |
| Bsp19I | CCATGG | 1 cut(s) | 122 |
| BspACI | CCGC | 3 cut(s) | 89, 391, 831 |
| BspANI | GGCC | 1 cut(s) | 834 |
| BspCNI | CTCAG | 2 cut(s) | 340, 708 |
| BspHI | TCATGA | 2 cut(s) | 178, 742 |
| BspLI | GGNNCC | 3 cut(s) | 120, 148, 784 |
| BspPI | GGATC | 1 cut(s) | 41 |
| BspT104I | TTCGAA | 1 cut(s) | 203 |
| BspTI | CTTAAG | 1 cut(s) | 596 |
| BsrBI | CCGCTC | 1 cut(s) | 89 |
| BsrFI | RCCGGY | 1 cut(s) | 839 |
| BsrI | ACTGG | 2 cut(s) | 463, 623 |
| BssAI | RCCGGY | 1 cut(s) | 839 |
| BssECI | CCNNGG | 2 cut(s) | 122, 686 |
| BssMI | GATC | 4 cut(s) | 46, 516, 739, 756 |
| BssT1I | CCWWGG | 1 cut(s) | 122 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 5 cut(s) | 66, 529, 687, 888, 977 |
| Bst6I | CTCTTC | 1 cut(s) | 27 |
| BstAFI | CTTAAG | 1 cut(s) | 596 |
| BstBI | TTCGAA | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 1 cut(s) | 417 |
| BstDEI | CTNAG | 3 cut(s) | 348, 716, 983 |
| BstDSI | CCRYGG | 2 cut(s) | 122, 686 |
| BstF5I | GGATG | 4 cut(s) | 278, 337, 765, 958 |
| BstKTI | GATC | 4 cut(s) | 49, 519, 742, 759 |
| BstMAI | GTCTC | 1 cut(s) | 314 |
| BstMBI | GATC | 4 cut(s) | 46, 516, 739, 756 |
| BstMCI | CGRYCG | 1 cut(s) | 976 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 548 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstNSI | RCATGY | 1 cut(s) | 317 |
| BstSCI | CCNGG | 2 cut(s) | 49, 448 |
| BstV1I | GCAGC | 1 cut(s) | 492 |
| BstV2I | GAAGAC | 1 cut(s) | 681 |
| BsuRI | GGCC | 1 cut(s) | 834 |
| BtgI | CCRYGG | 2 cut(s) | 122, 686 |
| BtsCI | GGATG | 4 cut(s) | 278, 337, 765, 958 |
| BtsIMutI | CAGTG | 2 cut(s) | 525, 946 |
| Cac8I | GCNNGC | 1 cut(s) | 417 |
| CciI | TCATGA | 2 cut(s) | 178, 742 |
| Cfr10I | RCCGGY | 1 cut(s) | 839 |
| Cfr13I | GGNCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| Csp6I | GTAC | 2 cut(s) | 260, 961 |
| CviQI | GTAC | 2 cut(s) | 260, 961 |
| DdeI | CTNAG | 3 cut(s) | 348, 716, 983 |
| DpnI | GATC | 4 cut(s) | 48, 518, 741, 758 |
| DpnII | GATC | 4 cut(s) | 46, 516, 739, 756 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 491, 935 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 491, 935 |
| EaeI | YGGCCR | 1 cut(s) | 832 |
| Eam1104I | CTCTTC | 1 cut(s) | 27 |
| EarI | CTCTTC | 1 cut(s) | 27 |
| Eco130I | CCWWGG | 1 cut(s) | 122 |
| Eco24I | GRGCYC | 2 cut(s) | 163, 729 |
| Eco47I | GGWCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| EcoO109I | RGGNCCY | 2 cut(s) | 118, 878 |
| EcoRI | GAATTC | 2 cut(s) | 41, 609 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| EcoT14I | CCWWGG | 1 cut(s) | 122 |
| EcoT38I | GRGCYC | 2 cut(s) | 163, 729 |
| ErhI | CCWWGG | 1 cut(s) | 122 |
| FaqI | GGGAC | 2 cut(s) | 160, 479 |
| FbaI | TGATCA | 3 cut(s) | 516, 739, 756 |
| FblI | GTMKAC | 1 cut(s) | 822 |
| Fnu4HI | GCNGC | 3 cut(s) | 90, 481, 832 |
| FokI | GGATG | 4 cut(s) | 285, 324, 752, 965 |
| FriOI | GRGCYC | 2 cut(s) | 163, 729 |
| Fsp4HI | GCNGC | 3 cut(s) | 90, 481, 832 |
| GluI | GCNGC | 3 cut(s) | 90, 481, 832 |
| HaeIII | GGCC | 1 cut(s) | 834 |
| HapII | CCGG | 2 cut(s) | 50, 840 |
| HindIII | AAGCTT | 2 cut(s) | 196, 916 |
| HinfI | GANTC | 4 cut(s) | 6, 292, 329, 944 |
| HpaII | CCGG | 2 cut(s) | 50, 840 |
| HphI | GGTGA | 3 cut(s) | 48, 89, 287 |
| Hpy166II | GTNNAC | 5 cut(s) | 56, 188, 396, 823, 961 |
| Hpy188I | TCNGA | 3 cut(s) | 349, 717, 902 |
| Hpy188III | TCNNGA | 6 cut(s) | 179, 671, 743, 773, 812, 876 |
| Hpy8I | GTNNAC | 5 cut(s) | 56, 188, 396, 823, 961 |
| HpyCH4III | ACNGT | 5 cut(s) | 66, 529, 687, 888, 977 |
| HpyCH4IV | ACGT | 1 cut(s) | 936 |
| HpyCH4V | TGCA | 3 cut(s) | 244, 419, 658 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 548 |
| HpyF3I | CTNAG | 3 cut(s) | 348, 716, 983 |
| HpySE526I | ACGT | 1 cut(s) | 936 |
| Ksp22I | TGATCA | 3 cut(s) | 516, 739, 756 |
| Kzo9I | GATC | 4 cut(s) | 46, 516, 739, 756 |
| LpnPI | CCDG | 9 cut(s) | 63, 274, 435, 444, 462, 604, 853, 861, 933 |
| Lsp1109I | GCAGC | 1 cut(s) | 492 |
| LweI | GCATC | 2 cut(s) | 346, 790 |
| MaeII | ACGT | 1 cut(s) | 936 |
| MaeIII | GTNAC | 4 cut(s) | 646, 668, 681, 941 |
| MalI | GATC | 4 cut(s) | 48, 518, 741, 758 |
| MbiI | CCGCTC | 1 cut(s) | 89 |
| MboI | GATC | 4 cut(s) | 46, 516, 739, 756 |
| MboII | GAAGA | 5 cut(s) | 41, 44, 240, 517, 686 |
| MhlI | GDGCHC | 2 cut(s) | 163, 729 |
| MluCI | AATT | 5 cut(s) | 41, 71, 279, 354, 609 |
| MlyI | GAGTC | 3 cut(s) | 15, 286, 938 |
| MmeI | TCCRAC | 3 cut(s) | 211, 515, 618 |
| MnlI | CCTC | 7 cut(s) | 69, 120, 497, 711, 716, 821, 891 |
| MroXI | GAANNNNTTC | 1 cut(s) | 199 |
| MseI | TTAA | 3 cut(s) | 18, 114, 597 |
| MslI | CAYNNNNRTG | 3 cut(s) | 183, 312, 663 |
| MspCI | CTTAAG | 1 cut(s) | 596 |
| MspI | CCGG | 2 cut(s) | 50, 840 |
| MspR9I | CCNGG | 2 cut(s) | 51, 450 |
| Mva1269I | GAATGC | 1 cut(s) | 244 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 548 |
| NciI | CCSGG | 1 cut(s) | 51 |
| NcoI | CCATGG | 1 cut(s) | 122 |
| NdeII | GATC | 4 cut(s) | 46, 516, 739, 756 |
| NlaIV | GGNNCC | 3 cut(s) | 120, 148, 784 |
| NmuCI | GTSAC | 3 cut(s) | 646, 668, 941 |
| NspI | RCATGY | 1 cut(s) | 317 |
| NspV | TTCGAA | 1 cut(s) | 203 |
| PagI | TCATGA | 2 cut(s) | 178, 742 |
| PciI | ACATGT | 1 cut(s) | 313 |
| PctI | GAATGC | 1 cut(s) | 244 |
| PdmI | GAANNNNTTC | 1 cut(s) | 199 |
| PfeI | GAWTC | 1 cut(s) | 329 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 156 |
| PfoI | TCCNGGA | 1 cut(s) | 448 |
| PkrI | GCNGC | 3 cut(s) | 91, 482, 833 |
| PleI | GAGTC | 3 cut(s) | 14, 286, 938 |
| PpsI | GAGTC | 3 cut(s) | 14, 286, 938 |
| PpuMI | RGGWCCY | 2 cut(s) | 118, 878 |
| PscI | ACATGT | 1 cut(s) | 313 |
| PsiI | TTATAA | 1 cut(s) | 911 |
| Psp5II | RGGWCCY | 2 cut(s) | 118, 878 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 3 cut(s) | 120, 148, 784 |
| PspPI | GGNCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| PspPPI | RGGWCCY | 2 cut(s) | 118, 878 |
| RsaI | GTAC | 2 cut(s) | 261, 962 |
| RsaNI | GTAC | 2 cut(s) | 260, 961 |
| RseI | CAYNNNNRTG | 3 cut(s) | 183, 312, 663 |
| SaqAI | TTAA | 3 cut(s) | 18, 114, 597 |
| SatI | GCNGC | 3 cut(s) | 90, 481, 832 |
| Sau3AI | GATC | 4 cut(s) | 46, 516, 739, 756 |
| Sau96I | GGNCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| SchI | GAGTC | 3 cut(s) | 15, 286, 938 |
| ScrFI | CCNGG | 2 cut(s) | 51, 450 |
| SduI | GDGCHC | 2 cut(s) | 163, 729 |
| SfaNI | GCATC | 2 cut(s) | 346, 790 |
| SfuI | TTCGAA | 1 cut(s) | 203 |
| SinI | GGWCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 183, 312, 663 |
| SmlI | CTYRAG | 1 cut(s) | 596 |
| SmoI | CTYRAG | 1 cut(s) | 596 |
| Sse9I | AATT | 5 cut(s) | 41, 71, 279, 354, 609 |
| SsiI | CCGC | 3 cut(s) | 89, 391, 831 |
| SspI | AATATT | 1 cut(s) | 855 |
| StyD4I | CCNGG | 2 cut(s) | 49, 448 |
| StyI | CCWWGG | 1 cut(s) | 122 |
| TaaI | ACNGT | 5 cut(s) | 66, 529, 687, 888, 977 |
| TaiI | ACGT | 1 cut(s) | 939 |
| TaqI | TCGA | 2 cut(s) | 45, 203 |
| TasI | AATT | 5 cut(s) | 41, 71, 279, 354, 609 |
| TatI | WGTACW | 1 cut(s) | 960 |
| TauI | GCSGC | 2 cut(s) | 92, 834 |
| TfiI | GAWTC | 1 cut(s) | 329 |
| Tru1I | TTAA | 3 cut(s) | 18, 114, 597 |
| Tru9I | TTAA | 3 cut(s) | 18, 114, 597 |
| TscAI | CASTG | 2 cut(s) | 532, 946 |
| TseFI | GTSAC | 3 cut(s) | 646, 668, 941 |
| TseI | GCWGC | 1 cut(s) | 480 |
| Tsp45I | GTSAC | 3 cut(s) | 646, 668, 941 |
| TspDTI | ATGAA | 3 cut(s) | 42, 324, 342 |
| TspGWI | ACGGA | 2 cut(s) | 330, 765 |
| TspRI | CASTG | 2 cut(s) | 532, 946 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 156 |
| Vha464I | CTTAAG | 1 cut(s) | 596 |
| VpaK11BI | GGWCC | 5 cut(s) | 118, 129, 147, 581, 878 |
| XapI | RAATTY | 3 cut(s) | 41, 354, 609 |
| XceI | RCATGY | 1 cut(s) | 317 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 105, 139, 776 |
| XmiI | GTMKAC | 1 cut(s) | 822 |
| XmnI | GAANNNNTTC | 1 cut(s) | 199 |