Rroxscaffold_2G00110960

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000224
Physical Location & Seq
Reverse (-)
35456148 .. 35460744
4597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110960.1

Sequence Viewer

Length: 1677 bp
ATGTCGAAACGTCTTCGTTCGAACGTTTCCGGTGCCCAAAAGGCTACTGTTGGTGTCACCGTGACAAAACGGCGACGTGTACAAGCAAATGAACCTTCACTTCCAAATTCTTTGCAAGATGAACTTGATGTTCCTGATATGCCTACCTCTAATAGAACTACCCAAAGGGCTATTGCTAGTACCATTATCCAAAGGCCTACTGTTGGTGACTCAATGAATGCACACGTTCAGTGCCAAACTACTAACCAGCCATCAATAAATGTTACAACTGAAGGGTTGAATGATGCTAGGACATCAGTCGATATCCAAGGATCTACTACAGAAAGTACAGAAAAAAAAGTGCGTGGAAAGACAAGAGGTTTAAATGCTGATAAGGTGCATGAGCAGCTTGGTACTAAAATACCTGTGACTTTCAAGAAAGAAAATGGCAGACCCACAGGTCCATATGCAGAAATGTTTGCTAATGAAATTGGATTCACCATTCGGAACCATGCACCTCTAAATGTGAAAAAATGGAAGGAAGTAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACTACTAAGTACGACATTGACATGTCTCTACCTTGGGTTAAGAGATATGTGCATAAATCTTTTGGAACGGTGTTCGCTAACTTCCGTTATAAGCTGAAGAAGCATTTTGAGCAATTCTCAACAAAAGAGGAAGCATTAGAAAATAAACACAAAGATGTTAAAATTGAAGAAGAATGGGCTTTTCTGTGCACTTATTTTTCTAGTGAAGATTTTCAGATTGTTTCAGAGAAAAATTCTATTAATAGGTCACGTTTGAAATATCACCATAAAGCAGGGTCGAAGTCTTTTATGTCGCATCAAGAACAGATTGCTGCACAATCGGGGGAGATGCTAGGTGCAATTGAACGCTTTGAAATGGAGTACAAAAGCATTAAAAAAGGTTGGGACTTGGGAGCGAAAGAATTATGGGATCAAATGGTTAAGATGCGAACTGAGACAACCCTTCTTGATGGGACTCGAACTATGAATGATGATGAAATATGTGCAAAGGTTCTTGGAGTAAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCCCAGGCCTCCACCATCTAGCACTTCTCGATCGTCAATAGATGAAATGTCTGAGAAGAATAAAGAGTTAGAAGATAAACTTGAAGAGACCCAAGATACTATAAAGGCTCAACAAGAAAAGATTGATGCACAAAACGTGCTGATCCAAGAATTGCAGGAGCAAGGCAAAAAGTTTGAGCATAATGATGTTGAAATGGCTGCTCCACAGCCAACTGGTGATCAAACTTCTAGGTCGGAAATTGATCTTACGTACAATCCAAAACGAGACACCGCAAAAGATGTAAGAAATGCTATGTTAGTCGTCGCTGCCCTCATTTCTGCGGCAACCTTCGCAGCGGGACTTTCTCGTCAGCAAACGTGGTATGGCTTGTATCTTGTATATGGATTTCCATATTATCCGGAAATATGGGGTGCTATGGCTTGTATGTCGGGAACCTACGGCGTTTCGGTTGGTGCCGTAAGTCCCTCTGGAGATGCTTTCTACGGTCGGTTCATATGGGTTGCCATCGTCGTTCCTTATATTATAAGGTTTACTGTTCACTTTTGGAAGAAAAGGCGTGCAAATTGGTCAAGGAGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

558

Amino Acids

63.23

Weight (kDa)

9.2

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 244 - 366 5.9e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 651, 1619
AasI GACNNNNNNGTC 2 cut(s) 438, 1440
AccB1I GGYRCC 2 cut(s) 32, 1547
AccIII TCCGGA 1 cut(s) 1492
AciI CCGC 3 cut(s) 1365, 1415, 1430
AclI AACGTT 1 cut(s) 24
AclWI GGATC 3 cut(s) 319, 978, 1231
AcsI RAATTY 2 cut(s) 106, 793
AcuI CTGAAG 2 cut(s) 291, 677
AfaI GTAC 7 cut(s) 81, 181, 328, 394, 572, 923, 1346
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 3 cut(s) 76, 223, 582
AgsI TTSAA 8 cut(s) 280, 415, 728, 817, 905, 914, 1178, 1286
AjiI CACGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 1097
AluBI AGCT 2 cut(s) 388, 655
AluI AGCT 2 cut(s) 388, 655
Alw21I GWGCWC 1 cut(s) 752
Alw26I GTCTC 4 cut(s) 591, 989, 1175, 1353
Alw44I GTGCAC 1 cut(s) 748
AlwI GGATC 3 cut(s) 319, 978, 1231
Aor13HI TCCGGA 1 cut(s) 1492
AoxI GGCC 3 cut(s) 194, 1093, 1100
ApaLI GTGCAC 1 cut(s) 748
ApeKI GCWGC 5 cut(s) 385, 872, 1292, 1400, 1427
ApoI RAATTY 2 cut(s) 106, 793
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 1 cut(s) 771
AspS9I GGNCC 2 cut(s) 440, 1094
AsuHPI GGTGA 5 cut(s) 49, 218, 469, 815, 1322
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 440
BaeGI GKGCMC 2 cut(s) 37, 752
BanI GGYRCC 2 cut(s) 32, 1547
BbsI GAAGAC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 752
BbvI GCAGC 5 cut(s) 397, 859, 1279, 1387, 1439
BccI CCATC 4 cut(s) 259, 1004, 1117, 1607
BceAI ACGGC 3 cut(s) 86, 1535, 1549
BciT130I CCWGG 1 cut(s) 1099
BclI TGATCA 2 cut(s) 549, 1312
BcoDI GTCTC 4 cut(s) 591, 989, 1175, 1353
BfaI CTAG 7 cut(s) 177, 288, 762, 893, 1113, 1323, 1675
BfmI CTRYAG 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 6 cut(s) 386, 873, 1293, 1401, 1416, 1428
BlsI GCNGC 6 cut(s) 387, 874, 1294, 1402, 1417, 1429
Bme1390I CCNGG 1 cut(s) 1099
Bme18I GGWCC 1 cut(s) 440
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 440, 1094
BmiI GGNNCC 5 cut(s) 34, 488, 1096, 1528, 1549
BmrFI CCNGG 1 cut(s) 1099
BmsI GCATC 6 cut(s) 274, 865, 879, 975, 1210, 1558
BoxI GACNNNNGTC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 5
BplI GAGNNNNNCTC 2 cut(s) 662, 694
BpmI CTGGAG 1 cut(s) 1584
Bpu14I TTCGAA 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 1344
BsaI GGTCTC 1 cut(s) 1175
BsaJI CCNNGG 3 cut(s) 307, 593, 1097
BsaWI WCCGGW 2 cut(s) 29, 1492
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 1312
BseAI TCCGGA 1 cut(s) 1492
BseBI CCWGG 1 cut(s) 1099
BseDI CCNNGG 3 cut(s) 307, 593, 1097
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 984, 1137
BseNI ACTGG 1 cut(s) 1312
BseSI GKGCMC 2 cut(s) 37, 752
BseXI GCAGC 5 cut(s) 397, 859, 1279, 1387, 1439
BsgI GTGCAG 1 cut(s) 858
Bsh1285I CGRYCG 2 cut(s) 1127, 1582
BshFI GGCC 3 cut(s) 196, 1095, 1102
BshNI GGYRCC 2 cut(s) 32, 1547
BsiEI CGRYCG 2 cut(s) 1127, 1582
BsiHKAI GWGCWC 1 cut(s) 752
BsiSI CCGG 2 cut(s) 30, 1493
BslFI GGGAC 4 cut(s) 959, 1027, 1446, 1542
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 4 cut(s) 591, 989, 1175, 1353
BsmFI GGGAC 4 cut(s) 959, 1027, 1446, 1542
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 196, 1095, 1102
Bso31I GGTCTC 1 cut(s) 1175
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 37, 752
Bsp13I TCCGGA 1 cut(s) 1492
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 7 cut(s) 311, 549, 970, 1124, 1236, 1312, 1336
BspACI CCGC 3 cut(s) 1365, 1415, 1430
BspANI GGCC 3 cut(s) 196, 1095, 1102
BspCNI CTCAG 2 cut(s) 985, 1138
BspEI TCCGGA 1 cut(s) 1492
BspLI GGNNCC 5 cut(s) 34, 488, 1096, 1528, 1549
BspPI GGATC 3 cut(s) 319, 978, 1231
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 2 cut(s) 32, 1547
BspTNI GGTCTC 1 cut(s) 1175
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 1 cut(s) 1312
BssECI CCNNGG 3 cut(s) 307, 593, 1097
BssMI GATC 7 cut(s) 311, 549, 970, 1124, 1236, 1312, 1336
BssT1I CCWWGG 2 cut(s) 307, 593
Bst2UI CCWGG 1 cut(s) 1099
Bst4CI ACNGT 6 cut(s) 49, 61, 202, 631, 1580, 1630
Bst6I CTCTTC 1 cut(s) 1173
BstAUI TGTACA 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 1344
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 1653
BstDEI CTNAG 3 cut(s) 567, 993, 1146
BstKTI GATC 7 cut(s) 314, 552, 973, 1127, 1239, 1315, 1339
BstMAI GTCTC 4 cut(s) 591, 989, 1175, 1353
BstMBI GATC 7 cut(s) 311, 549, 970, 1124, 1236, 1312, 1336
BstMCI CGRYCG 2 cut(s) 1127, 1582
BstMWI GCNNNNNNNGC 5 cut(s) 41, 385, 661, 670, 1424
BstNI CCWGG 1 cut(s) 1099
BstNSI RCATGY 1 cut(s) 586
BstPAI GACNNNNGTC 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 1097
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 2 cut(s) 37, 752
BstSNI TACGTA 1 cut(s) 1344
BstV1I GCAGC 5 cut(s) 397, 859, 1279, 1387, 1439
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 3 cut(s) 196, 1095, 1102
BtrI CACGTC 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 1653
Cfr13I GGNCC 2 cut(s) 440, 1094
Csp6I GTAC 7 cut(s) 80, 180, 327, 393, 571, 922, 1345
CspCI CAANNNNNGTGG 2 cut(s) 1066, 1101
CviAII CATG 3 cut(s) 380, 491, 583
CviQI GTAC 7 cut(s) 80, 180, 327, 393, 571, 922, 1345
DdeI CTNAG 3 cut(s) 567, 993, 1146
DpnI GATC 7 cut(s) 313, 551, 972, 1126, 1238, 1314, 1338
DpnII GATC 7 cut(s) 311, 549, 970, 1124, 1236, 1312, 1336
DraI TTTAAA 1 cut(s) 363
DrdI GACNNNNNNGTC 2 cut(s) 438, 1440
DseDI GACNNNNNNGTC 2 cut(s) 438, 1440
Eam1104I CTCTTC 1 cut(s) 1173
EarI CTCTTC 1 cut(s) 1173
Eco105I TACGTA 1 cut(s) 1344
Eco130I CCWWGG 2 cut(s) 307, 593
Eco147I AGGCCT 2 cut(s) 196, 1102
Eco31I GGTCTC 1 cut(s) 1175
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 291, 677
EcoRII CCWGG 1 cut(s) 1097
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 307, 593
ErhI CCWWGG 2 cut(s) 307, 593
FaeI CATG 3 cut(s) 383, 494, 586
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 1158, 1190
FaqI GGGAC 4 cut(s) 959, 1027, 1446, 1542
FatI CATG 3 cut(s) 379, 490, 582
FauI CCCGC 1 cut(s) 1423
FauNDI CATATG 2 cut(s) 445, 1589
FbaI TGATCA 2 cut(s) 549, 1312
Fnu4HI GCNGC 6 cut(s) 386, 873, 1293, 1401, 1416, 1428
Fsp4HI GCNGC 6 cut(s) 386, 873, 1293, 1401, 1416, 1428
FspBI CTAG 7 cut(s) 177, 288, 762, 893, 1113, 1323, 1675
GluI GCNGC 6 cut(s) 386, 873, 1293, 1401, 1416, 1428
GsuI CTGGAG 1 cut(s) 1584
HaeIII GGCC 3 cut(s) 196, 1095, 1102
HapII CCGG 2 cut(s) 30, 1493
Hin1II CATG 3 cut(s) 383, 494, 586
HinfI GANTC 4 cut(s) 209, 474, 1015, 1669
HpaII CCGG 2 cut(s) 30, 1493
HphI GGTGA 5 cut(s) 49, 218, 469, 815, 1322
Hpy166II GTNNAC 4 cut(s) 80, 750, 1626, 1633
Hpy188I TCNGA 5 cut(s) 486, 777, 787, 1147, 1330
Hpy188III TCNNGA 8 cut(s) 134, 415, 860, 1007, 1122, 1493, 1524, 1563
Hpy8I GTNNAC 4 cut(s) 80, 750, 1626, 1633
Hpy99I CGWCG 3 cut(s) 78, 1400, 1607
HpyAV CCTTC 5 cut(s) 105, 266, 511, 1013, 1432
HpyCH4III ACNGT 6 cut(s) 49, 61, 202, 631, 1580, 1630
HpyCH4IV ACGT 8 cut(s) 10, 24, 76, 225, 811, 1230, 1343, 1451
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 385, 661, 670, 1424
HpyF3I CTNAG 3 cut(s) 567, 993, 1146
HpySE526I ACGT 8 cut(s) 10, 24, 76, 225, 811, 1230, 1343, 1451
Hsp92II CATG 3 cut(s) 383, 494, 586
Kpn2I TCCGGA 1 cut(s) 1492
Ksp22I TGATCA 2 cut(s) 549, 1312
Kzo9I GATC 7 cut(s) 311, 549, 970, 1124, 1236, 1312, 1336
LmnI GCTCC 3 cut(s) 953, 1252, 1300
Lsp1109I GCAGC 5 cut(s) 397, 859, 1279, 1387, 1439
LweI GCATC 6 cut(s) 274, 865, 879, 975, 1210, 1558
MaeI CTAG 7 cut(s) 177, 288, 762, 893, 1113, 1323, 1675
MaeII ACGT 8 cut(s) 10, 24, 76, 225, 811, 1230, 1343, 1451
MaeIII GTNAC 7 cut(s) 55, 61, 206, 262, 406, 807, 1670
MalI GATC 7 cut(s) 313, 551, 972, 1126, 1238, 1314, 1338
MboI GATC 7 cut(s) 311, 549, 970, 1124, 1236, 1312, 1336
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 37, 752
MlyI GAGTC 2 cut(s) 203, 1009
MmeI TCCRAC 1 cut(s) 1308
MnlI CCTC 7 cut(s) 157, 350, 507, 682, 1113, 1415, 1570
MroI TCCGGA 1 cut(s) 1492
MroXI GAANNNNTTC 1 cut(s) 771
MseI TTAA 6 cut(s) 362, 600, 720, 801, 933, 981
MslI CAYNNNNRTG 3 cut(s) 581, 714, 1278
MspA1I CMGCKG 1 cut(s) 1430
MspI CCGG 2 cut(s) 30, 1493
MspR9I CCNGG 1 cut(s) 1099
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 1099
MwoI GCNNNNNNNGC 5 cut(s) 41, 385, 661, 670, 1424
NdeI CATATG 2 cut(s) 445, 1589
NdeII GATC 7 cut(s) 311, 549, 970, 1124, 1236, 1312, 1336
NlaIII CATG 3 cut(s) 383, 494, 586
NlaIV GGNNCC 5 cut(s) 34, 488, 1096, 1528, 1549
NmuCI GTSAC 6 cut(s) 55, 61, 206, 406, 807, 1670
NspI RCATGY 1 cut(s) 586
NspV TTCGAA 1 cut(s) 20
PceI AGGCCT 2 cut(s) 196, 1102
PciI ACATGT 1 cut(s) 582
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 1 cut(s) 474
PkrI GCNGC 6 cut(s) 387, 874, 1294, 1402, 1417, 1429
Ple19I CGATCG 1 cut(s) 1127
PleI GAGTC 2 cut(s) 203, 1009
PpsI GAGTC 2 cut(s) 203, 1009
Ppu21I YACGTR 1 cut(s) 1344
PscI ACATGT 1 cut(s) 582
PshAI GACNNNNGTC 1 cut(s) 296
PshBI ATTAAT 1 cut(s) 801
PsiI TTATAA 2 cut(s) 651, 1619
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 1097
PspN4I GGNNCC 5 cut(s) 34, 488, 1096, 1528, 1549
PspPI GGNCC 2 cut(s) 440, 1094
PsuI RGATCY 1 cut(s) 311
PvuI CGATCG 1 cut(s) 1127
RsaI GTAC 7 cut(s) 81, 181, 328, 394, 572, 923, 1346
RsaNI GTAC 7 cut(s) 80, 180, 327, 393, 571, 922, 1345
RseI CAYNNNNRTG 3 cut(s) 581, 714, 1278
SaqAI TTAA 6 cut(s) 362, 600, 720, 801, 933, 981
SatI GCNGC 6 cut(s) 386, 873, 1293, 1401, 1416, 1428
Sau3AI GATC 7 cut(s) 311, 549, 970, 1124, 1236, 1312, 1336
Sau96I GGNCC 2 cut(s) 440, 1094
SchI GAGTC 2 cut(s) 203, 1009
ScrFI CCNGG 1 cut(s) 1099
SduI GDGCHC 2 cut(s) 37, 752
SfaNI GCATC 6 cut(s) 274, 865, 879, 975, 1210, 1558
SfcI CTRYAG 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 3 cut(s) 581, 714, 1278
SnaBI TACGTA 1 cut(s) 1344
SseBI AGGCCT 2 cut(s) 196, 1102
SsiI CCGC 3 cut(s) 1365, 1415, 1430
SspMI CTAG 7 cut(s) 177, 288, 762, 893, 1113, 1323, 1675
StuI AGGCCT 2 cut(s) 196, 1102
StyD4I CCNGG 1 cut(s) 1097
StyI CCWWGG 2 cut(s) 307, 593
TaaI ACNGT 6 cut(s) 49, 61, 202, 631, 1580, 1630
TaiI ACGT 8 cut(s) 13, 27, 79, 228, 814, 1233, 1346, 1454
TaqI TCGA 6 cut(s) 5, 20, 300, 839, 1018, 1123
TatI WGTACW 3 cut(s) 79, 326, 921
TauI GCSGC 1 cut(s) 1418
TfiI GAWTC 1 cut(s) 474
Tru1I TTAA 6 cut(s) 362, 600, 720, 801, 933, 981
Tru9I TTAA 6 cut(s) 362, 600, 720, 801, 933, 981
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 6 cut(s) 55, 61, 206, 406, 807, 1670
TseI GCWGC 5 cut(s) 385, 872, 1292, 1400, 1427
Tsp45I GTSAC 6 cut(s) 55, 61, 206, 406, 807, 1670
TspDTI ATGAA 8 cut(s) 105, 135, 230, 480, 1040, 1050, 1152, 1576
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 1 cut(s) 236
VneI GTGCAC 1 cut(s) 748
VpaK11BI GGWCC 1 cut(s) 440
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 2 cut(s) 106, 793
XceI RCATGY 1 cut(s) 586
XmnI GAANNNNTTC 1 cut(s) 771
XspI CTAG 7 cut(s) 177, 288, 762, 893, 1113, 1323, 1675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.