RLG00000001166

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000224
Physical Location & Seq
Reverse (-)
11163098 .. 11180459
17362 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001166

Sequence Viewer

Length: 633 bp
ATGAGTAAACGCTCTCGTGTGCAAACTACTAATCAGTCATGCGAAAATTATGTAGAAGATGAACTCAATTCTGCTATTGGTACCACTACAGAACGAACTACTATTGGGGTCAGAATTAGTTCACGTCTTCAGCATCAAACTGCTAATGATCAGCTATTGATAAATGTTACAACTGAAGAGCAAAATGATAATGTGATGTCAGCCAGTAATCAAGACCCTCCTACAGGTCCAACAAAAACGGTGCGGGGAAAGACAAGAGGAGTGAATGCAGATAAGAACAAGTTTGACATTGACATGTCTCTCCCTTGGGTCGAGAGATATGTAATTACAACATGTCAGACTGTATTTTGTAATTTTCGTTATAAGTTGAAGAAACATTTTGAGAAATTTTCAACAATCGAGGAAGCAATTGAAAATAAACACGATGATGTCAAGACTCAGGAAGAATGGGAATTTCTCTGTACTCGTTTTTCTAGTGAAAAGTTTCAGATTCGTTCAGAGAAGAATGCTATAAATAGGTCAAAGTTGACACATCACCACAAAACTAGGTCAAAGTCATTTATGTCTCACCAAGAGCAAATTTTTTATTATTATGAGATTTATTATTGGTTTGATTATTTCAATTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

211

Amino Acids

24.93

Weight (kDa)

7.7

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 1 cut(s) 244
AcsI RAATTY 3 cut(s) 386, 452, 579
AcuI CTGAAG 2 cut(s) 113, 195
AfaI GTAC 2 cut(s) 82, 463
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 2 cut(s) 294, 332
AgsI TTSAA 4 cut(s) 370, 393, 413, 622
AjiI CACGTC 1 cut(s) 125
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 303, 570
ApoI RAATTY 3 cut(s) 386, 452, 579
Asp700I GAANNNNTTC 2 cut(s) 118, 483
Asp718I GGTACC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 527, 560
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 80
BauI CACGAG 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 119
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 303, 570
BfaI CTAG 2 cut(s) 474, 546
BfmI CTRYAG 2 cut(s) 87, 222
Bme18I GGWCC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 2 cut(s) 303, 570
BsmI GAATGC 2 cut(s) 271, 511
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 241, 343
Bst6I CTCTTC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 438
BstENI CCTNNNNNAGG 1 cut(s) 222
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 2 cut(s) 303, 570
BstMBI GATC 1 cut(s) 148
BstNSI RCATGY 2 cut(s) 298, 336
BstSFI CTRYAG 2 cut(s) 87, 222
BstV2I GAAGAC 1 cut(s) 119
BtrI CACGTC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 81, 462
CviAII CATG 3 cut(s) 39, 295, 333
CviJI RGCY 2 cut(s) 154, 203
CviKI_1 RGCY 2 cut(s) 154, 203
CviQI GTAC 2 cut(s) 81, 462
DdeI CTNAG 1 cut(s) 438
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 113, 195
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 3 cut(s) 42, 298, 336
FaiI YATR 9 cut(s) 40, 51, 296, 321, 334, 363, 512, 563, 594
FatI CATG 3 cut(s) 38, 294, 332
FauI CCCGC 1 cut(s) 237
FbaI TGATCA 1 cut(s) 148
FspBI CTAG 2 cut(s) 474, 546
Hin1II CATG 3 cut(s) 42, 298, 336
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 2 cut(s) 436, 490
HphI GGTGA 2 cut(s) 527, 560
Hpy166II GTNNAC 3 cut(s) 8, 122, 528
Hpy188I TCNGA 4 cut(s) 113, 339, 489, 499
Hpy188III TCNNGA 4 cut(s) 212, 313, 433, 440
Hpy8I GTNNAC 3 cut(s) 8, 122, 528
HpyCH4III ACNGT 2 cut(s) 241, 343
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 22, 269
HpyF3I CTNAG 1 cut(s) 438
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 42, 298, 336
KpnI GGTACC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 1 cut(s) 148
LguI GCTCTTC 1 cut(s) 171
LpnPI CCDG 3 cut(s) 210, 217, 425
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 474, 546
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 6 cut(s) 68, 119, 188, 382, 455, 514
MfeI CAATTG 1 cut(s) 408
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 3 cut(s) 228, 251, 394
MroXI GAANNNNTTC 2 cut(s) 118, 483
MseI TTAA 1 cut(s) 631
MslI CAYNNNNRTG 2 cut(s) 293, 426
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 2 cut(s) 271, 511
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 42, 298, 336
NlaIV GGNNCC 1 cut(s) 82
NspI RCATGY 2 cut(s) 298, 336
PciI ACATGT 2 cut(s) 294, 332
PciSI GCTCTTC 1 cut(s) 171
PctI GAATGC 2 cut(s) 271, 511
PdmI GAANNNNTTC 2 cut(s) 118, 483
PfeI GAWTC 1 cut(s) 490
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PscI ACATGT 2 cut(s) 294, 332
PsiI TTATAA 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 227
RsaI GTAC 2 cut(s) 82, 463
RsaNI GTAC 2 cut(s) 81, 462
RseI CAYNNNNRTG 2 cut(s) 293, 426
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 631
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 430
SetI ASST 5 cut(s) 127, 156, 229, 521, 551
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 2 cut(s) 87, 222
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 293, 426
SsiI CCGC 1 cut(s) 244
SspMI CTAG 2 cut(s) 474, 546
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 241, 343
TaiI ACGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 312, 399
TatI WGTACW 1 cut(s) 461
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 1 cut(s) 631
Tru9I TTAA 1 cut(s) 631
TspDTI ATGAA 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 3 cut(s) 386, 452, 579
XceI RCATGY 2 cut(s) 298, 336
XmnI GAANNNNTTC 2 cut(s) 118, 483
XspI CTAG 2 cut(s) 474, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.