Rh7CG432800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000224
Physical Location & Seq
Reverse (-)
56625943 .. 56628214
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG432800.1

Sequence Viewer

Length: 396 bp
ATGGATATTAAATGGAAAGAGTTGGAGCATTTCCAAAATTTAGCTCAAGTTCAAGATTCTAAGCTGTTGGCAGATTATTTAATTGCTCGGGTTGTACAATTGGGTCCTCAAATTGTTTGGATATCCAATGTAGTTGTAGTTTTGGCTCTTCGATCTTGTGAGTCTTGTAATAGCAGTGACAAAATGTCGAAACGTCTTCGTTCTAACGTTTCCGGTGCCCAAAAGGCTAATGTTGGTGACACTGTGACAAAACGGTTACGTGTACAAGCAAATGAACCTTCACCCCCAACTTCTTTGCAAGATGAACTTGATGTTCCTGATATGCCTACCTCTAATAGAACTACCCAAAGGGCTATTGCTAGTACCATTATCCAAAGGCCTACTGTTGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.57

Weight (kDa)

8.68

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AclI AACGTT 1 cut(s) 207
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 3 cut(s) 96, 264, 364
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 1 cut(s) 53
AhdI GACNNNNNGTC 1 cut(s) 184
AluBI AGCT 2 cut(s) 44, 64
AluI AGCT 2 cut(s) 44, 64
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 248, 273
AvaI CYCGRG 1 cut(s) 87
AvaII GGWCC 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 188
BfaI CTAG 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 104
BmeRI GACNNNNNGTC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 105, 217
BpiI GAAGAC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 220
BshFI GGCC 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 213
BsnI GGCC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 220
Bsp1407I TGTACA 2 cut(s) 94, 262
Bsp143I GATC 1 cut(s) 152
BspANI GGCC 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 105, 217
BspQI GCTCTTC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 215
BsrGI TGTACA 2 cut(s) 94, 262
BssMI GATC 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 244, 255, 385
Bst6I CTCTTC 1 cut(s) 153
BstAUI TGTACA 2 cut(s) 94, 262
BstBAI YACGTR 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 60
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 379
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 181, 240
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 3 cut(s) 95, 263, 363
CviJI RGCY 6 cut(s) 44, 64, 146, 227, 353, 379
CviKI_1 RGCY 6 cut(s) 44, 64, 146, 227, 353, 379
CviQI GTAC 3 cut(s) 95, 263, 363
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 153
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 379
Eco32I GATATC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 104
EcoRV GATATC 1 cut(s) 123
FaiI YATR 2 cut(s) 323, 394
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FspBI CTAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 379
HapII CCGG 1 cut(s) 213
HinfI GANTC 2 cut(s) 56, 161
HpaII CCGG 1 cut(s) 213
HphI GGTGA 2 cut(s) 248, 273
Hpy166II GTNNAC 1 cut(s) 263
Hpy188III TCNNGA 2 cut(s) 53, 317
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 3 cut(s) 244, 255, 385
HpyCH4IV ACGT 3 cut(s) 193, 207, 259
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 3 cut(s) 193, 207, 259
Kzo9I GATC 1 cut(s) 152
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 226, 330
MaeI CTAG 1 cut(s) 360
MaeII ACGT 3 cut(s) 193, 207, 259
MaeIII GTNAC 4 cut(s) 176, 236, 244, 255
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 2 cut(s) 140, 188
MfeI CAATTG 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 4 cut(s) 37, 81, 98, 111
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 2 cut(s) 117, 340
MseI TTAA 2 cut(s) 9, 80
MspI CCGG 1 cut(s) 213
MunI CAATTG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 105, 217
NmuCI GTSAC 3 cut(s) 176, 236, 244
PceI AGGCCT 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 104
Psp1406I AACGTT 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 105, 217
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
RsaI GTAC 3 cut(s) 96, 264, 364
RsaNI GTAC 3 cut(s) 95, 263, 363
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 9, 80
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 220
SetI ASST 7 cut(s) 46, 66, 196, 210, 262, 280, 332
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 4 cut(s) 37, 81, 98, 111
SseBI AGGCCT 1 cut(s) 379
SspMI CTAG 1 cut(s) 360
StuI AGGCCT 1 cut(s) 379
TaaI ACNGT 3 cut(s) 244, 255, 385
TaiI ACGT 3 cut(s) 196, 210, 262
TaqI TCGA 2 cut(s) 151, 188
TasI AATT 4 cut(s) 37, 81, 98, 111
TatI WGTACW 2 cut(s) 94, 262
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 9, 80
Tru9I TTAA 2 cut(s) 9, 80
TscAI CASTG 2 cut(s) 181, 247
TseFI GTSAC 3 cut(s) 176, 236, 244
Tsp45I GTSAC 3 cut(s) 176, 236, 244
TspDTI ATGAA 2 cut(s) 288, 318
TspRI CASTG 2 cut(s) 181, 247
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 1 cut(s) 37
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.