Rroxscaffold_1G00061370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000224
Physical Location & Seq
Forward (+)
83513794 .. 83537496
23703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061370.1

Sequence Viewer

Length: 702 bp
ATGACTTTTGCTCAGCTTCAGCAGCTCTCACTACTAAATTCTCCCCATTCTACCGATGATGGTGGATCCATTGATCTAAACTTTGGTTCCATTGGTTCTACCGGTGCTGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCATATTCCTCCTCACCCTTCAACACTAATACCGCTCAAGATATTGAGATTGATTCGAAATCGGCTCAAACGGGGCCGGGTCCTCCGCCGTCACTACGGTCCATGTTGCGGCGTAAGGATGCCACCGGCGGCTGCGCAAGGTCTAGGCGAAGCTGCGGAGGTGGTTTAAGGTTTGTTGTATCAAAATATGTACTTGCGGAGGTGTATGTTCTTGTTGTATCAAAATATGTACTTGCGGAGGGAGGTGTATGTTCTCGTGAGCCAAAATCAAGTTGCGTTGGTGTTCATTTCTCCTGTTCATTTAACAGTGATTTTGGCTTGAAATGGAGTGACTCTCAAGTGATTTTGGCTCGAAATGGAGTGACTCTCAGCGATCGGACTATTTCATGGAGTGTCAAACAAGGTATCAAGAATTTCATTGTTGGTTTGTTTAGCTTTTGCAGATTCCATGCGAAAAAGTGTGCACCTGATTGTTTTGGTGCTGTTCCTTTGTCTATTGTTTTGCACTATCTTATTCTCTTATTTTTATTCAGGTATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.14

Weight (kDa)

8.8

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 194
AciI CCGC 7 cut(s) 192, 245, 268, 288, 315, 356, 395
AclWI GGATC 5 cut(s) 60, 73, 108, 121, 142
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 2 cut(s) 37, 571
AfaI GTAC 2 cut(s) 351, 390
AfiI CCNNNNNNNGG 1 cut(s) 267
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 3 cut(s) 127, 181, 481
AluBI AGCT 4 cut(s) 16, 25, 312, 594
AluI AGCT 4 cut(s) 16, 25, 312, 594
Alw21I GWGCWC 1 cut(s) 625
Alw44I GTGCAC 1 cut(s) 621
AlwI GGATC 5 cut(s) 60, 73, 108, 121, 142
AoxI GGCC 2 cut(s) 145, 233
ApaLI GTGCAC 1 cut(s) 621
ApeKI GCWGC 3 cut(s) 22, 291, 312
ApoI RAATTY 2 cut(s) 37, 571
AsiGI ACCGGT 1 cut(s) 101
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 3 cut(s) 233, 239, 258
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 165
AsuII TTCGAA 1 cut(s) 215
AvaII GGWCC 2 cut(s) 239, 258
BaeGI GKGCMC 1 cut(s) 625
BamHI GGATCC 2 cut(s) 65, 113
BauI CACGAG 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 3 cut(s) 34, 278, 299
BccI CCATC 2 cut(s) 53, 104
BceAI ACGGC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 237
BfaI CTAG 1 cut(s) 303
BisI GCNGC 5 cut(s) 23, 269, 289, 292, 313
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 5 cut(s) 24, 270, 290, 293, 314
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 2 cut(s) 239, 258
BmgT120I GGNCC 3 cut(s) 233, 239, 258
BmiI GGNNCC 5 cut(s) 67, 88, 115, 234, 240
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 268
BplI GAGNNNNNCTC 4 cut(s) 478, 510, 510, 542
Bpu1102I GCTNAGC 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 180, 480
BpuMI CCSGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse118I RCCGGY 2 cut(s) 101, 284
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 26, 541
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 3 cut(s) 34, 278, 299
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 2 cut(s) 147, 235
BshTI ACCGGT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 3 cut(s) 102, 236, 285
BslI CCNNNNNNNGG 1 cut(s) 267
BsnI GGCC 2 cut(s) 147, 235
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 5 cut(s) 65, 73, 113, 134, 532
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 7 cut(s) 192, 245, 268, 288, 315, 356, 395
BspANI GGCC 2 cut(s) 147, 235
BspCNI CTCAG 2 cut(s) 25, 540
BspLI GGNNCC 5 cut(s) 67, 88, 115, 234, 240
BspPI GGATC 5 cut(s) 60, 73, 108, 121, 142
BspT104I TTCGAA 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 101, 284
BssAI RCCGGY 2 cut(s) 101, 284
BssMI GATC 5 cut(s) 65, 73, 113, 134, 532
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 258, 467
BstBI TTCGAA 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 12, 527
BstF5I GGATG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 5 cut(s) 68, 76, 116, 137, 535
BstMBI GATC 5 cut(s) 65, 73, 113, 134, 532
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 34, 278, 299
BstX2I RGATCY 2 cut(s) 65, 113
BstYI RGATCY 2 cut(s) 65, 113
BsuRI GGCC 2 cut(s) 147, 235
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 472
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 2 cut(s) 101, 284
Cfr13I GGNCC 3 cut(s) 233, 239, 258
Csp6I GTAC 2 cut(s) 350, 389
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 4 cut(s) 138, 262, 546, 608
CviQI GTAC 2 cut(s) 350, 389
DdeI CTNAG 2 cut(s) 12, 527
DpnI GATC 5 cut(s) 67, 75, 115, 136, 534
DpnII GATC 5 cut(s) 65, 73, 113, 134, 532
EaeI YGGCCR 1 cut(s) 145
EciI GGCGGA 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 239, 258
EcoO109I RGGNCCY 1 cut(s) 239
FaeI CATG 4 cut(s) 141, 265, 549, 611
FatI CATG 4 cut(s) 137, 261, 545, 607
Fnu4HI GCNGC 5 cut(s) 23, 269, 289, 292, 313
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 5 cut(s) 23, 269, 289, 292, 313
FspBI CTAG 1 cut(s) 303
FspI TGCGCA 1 cut(s) 295
GlaI GCGC 1 cut(s) 295
GluI GCNGC 5 cut(s) 23, 269, 289, 292, 313
HaeIII GGCC 2 cut(s) 147, 235
HapII CCGG 3 cut(s) 102, 236, 285
HhaI GCGC 1 cut(s) 296
Hin1II CATG 4 cut(s) 141, 265, 549, 611
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 212, 491, 523, 603
HpaII CCGG 3 cut(s) 102, 236, 285
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 157, 623
Hpy188I TCNGA 1 cut(s) 537
Hpy188III TCNNGA 3 cut(s) 197, 416, 568
Hpy8I GTNNAC 2 cut(s) 157, 623
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 258, 467
HpyCH4V TGCA 3 cut(s) 600, 623, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 12, 527
Hsp92II CATG 4 cut(s) 141, 265, 549, 611
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 5 cut(s) 65, 73, 113, 134, 532
LpnPI CCDG 6 cut(s) 115, 249, 298, 466, 639, 676
Lsp1109I GCAGC 3 cut(s) 34, 278, 299
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 249, 488, 520
MalI GATC 5 cut(s) 67, 75, 115, 136, 534
MbiI CCGCTC 1 cut(s) 194
MboI GATC 5 cut(s) 65, 73, 113, 134, 532
MflI RGATCY 2 cut(s) 65, 113
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 3 cut(s) 37, 127, 571
MlyI GAGTC 2 cut(s) 485, 517
MnlI CCTC 7 cut(s) 178, 181, 252, 311, 352, 391, 395
MseI TTAA 2 cut(s) 326, 462
MspI CCGG 3 cut(s) 102, 236, 285
MspR9I CCNGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 237
NdeII GATC 5 cut(s) 65, 73, 113, 134, 532
NlaIII CATG 4 cut(s) 141, 265, 549, 611
NlaIV GGNNCC 5 cut(s) 67, 88, 115, 234, 240
NmuCI GTSAC 3 cut(s) 249, 488, 520
NsbI TGCGCA 1 cut(s) 295
NspV TTCGAA 1 cut(s) 215
PfeI GAWTC 2 cut(s) 212, 603
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 5 cut(s) 24, 270, 290, 293, 314
Ple19I CGATCG 1 cut(s) 535
PleI GAGTC 2 cut(s) 485, 517
PpsI GAGTC 2 cut(s) 485, 517
PpuMI RGGWCCY 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 239
PspN4I GGNNCC 5 cut(s) 67, 88, 115, 234, 240
PspPI GGNCC 3 cut(s) 233, 239, 258
PspPPI RGGWCCY 1 cut(s) 239
PsuI RGATCY 2 cut(s) 65, 113
PvuI CGATCG 1 cut(s) 535
RsaI GTAC 2 cut(s) 351, 390
RsaNI GTAC 2 cut(s) 350, 389
SaqAI TTAA 2 cut(s) 326, 462
SatI GCNGC 5 cut(s) 23, 269, 289, 292, 313
Sau3AI GATC 5 cut(s) 65, 73, 113, 134, 532
Sau96I GGNCC 3 cut(s) 233, 239, 258
SchI GAGTC 2 cut(s) 485, 517
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 215
SgrAI CRCCGGYG 1 cut(s) 284
SinI GGWCC 2 cut(s) 239, 258
SmlI CTYRAG 2 cut(s) 195, 495
SmoI CTYRAG 2 cut(s) 195, 495
Sse9I AATT 3 cut(s) 37, 127, 571
SsiI CCGC 7 cut(s) 192, 245, 268, 288, 315, 356, 395
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 258, 467
TaqI TCGA 3 cut(s) 120, 215, 511
TasI AATT 3 cut(s) 37, 127, 571
TatI WGTACW 2 cut(s) 349, 388
TauI GCSGC 2 cut(s) 271, 291
TfiI GAWTC 2 cut(s) 212, 603
Tru1I TTAA 2 cut(s) 326, 462
Tru9I TTAA 2 cut(s) 326, 462
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 3 cut(s) 249, 488, 520
TseI GCWGC 3 cut(s) 22, 291, 312
Tsp45I GTSAC 3 cut(s) 249, 488, 520
TspDTI ATGAA 4 cut(s) 434, 447, 534, 565
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 472
VneI GTGCAC 1 cut(s) 621
VpaK11BI GGWCC 2 cut(s) 239, 258
XapI RAATTY 2 cut(s) 37, 571
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.