RLG00000000749

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
4922327 .. 4923454
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000749

Sequence Viewer

Length: 465 bp
ATGCGCCGTTCCAATGTGTCTAACATCCAAAAGCCTACTACTGGTAATGCACCGAGTAAACGCTCTCGTGTGCAAACTACTGATCAGCCATGCCCAAATGTATCTCGTTCTACTTCAGGTAGTGCAATGAGTAAACGCTATCGTGTGCAAACTACTGATCAGCCATGCAAAAATTATGTAGAAGATGGACTCAATTCTACTATTGGTACTACTACAGAACGAACTACTACTGGGGTCAGAATTAGTTCACGTCTTCAGCATCAAACTGCTAATGATCAGCTATTGATAAATGTTACAACTGAAGAGCAAAATGATAATGTGATGTCAGCCAGTAATCAAGACCCTCCTACAGGTCCAACAAAAAAGGTGTGGGGAAAGACAAGAGGAGTGAATGCAGATAAAGTGCTTTCTCAATTGAATGCTAAAATACCTGTCACTCTGACTGAACAAAATGAACAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.92

Weight (kDa)

9.79

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 3 cut(s) 99, 239, 321
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 41, 350
AgsI TTSAA 1 cut(s) 418
AjiI CACGTC 1 cut(s) 251
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Asp700I GAANNNNTTC 1 cut(s) 244
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 353
BauI CACGAG 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 245
BccI CCATC 1 cut(s) 179
BclI TGATCA 3 cut(s) 82, 157, 274
BfmI CTRYAG 2 cut(s) 213, 348
Bme18I GGWCC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 350
Bse1I ACTGG 3 cut(s) 46, 235, 330
Bse3DI GCAATG 1 cut(s) 132
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 41, 350
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 3 cut(s) 46, 235, 330
BseRI GAGGAG 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 41, 350
BsmI GAATGC 2 cut(s) 397, 424
Bsp143I GATC 3 cut(s) 82, 157, 274
BspQI GCTCTTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 3 cut(s) 46, 235, 330
BssMI GATC 3 cut(s) 82, 157, 274
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 85, 160, 277
BstMBI GATC 3 cut(s) 82, 157, 274
BstSFI CTRYAG 2 cut(s) 213, 348
BstV2I GAAGAC 1 cut(s) 245
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 24
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 90, 165
CviJI RGCY 5 cut(s) 34, 88, 163, 280, 329
CviKI_1 RGCY 5 cut(s) 34, 88, 163, 280, 329
CviQI GTAC 1 cut(s) 207
DpnI GATC 3 cut(s) 84, 159, 276
DpnII GATC 3 cut(s) 82, 157, 274
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 3 cut(s) 99, 239, 321
EcoNI CCTNNNNNAGG 1 cut(s) 348
FaeI CATG 2 cut(s) 93, 168
FaiI YATR 3 cut(s) 91, 166, 177
FatI CATG 2 cut(s) 89, 164
FbaI TGATCA 3 cut(s) 82, 157, 274
FokI GGATG 1 cut(s) 11
GlaI GCGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 93, 168
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 189
Hpy166II GTNNAC 3 cut(s) 59, 134, 248
Hpy188I TCNGA 2 cut(s) 239, 441
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 3 cut(s) 59, 134, 248
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 6 cut(s) 50, 73, 125, 148, 168, 395
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 93, 168
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 3 cut(s) 82, 157, 274
Kzo9I GATC 3 cut(s) 82, 157, 274
LguI GCTCTTC 1 cut(s) 297
LpnPI CCDG 6 cut(s) 27, 102, 216, 336, 343, 444
LweI GCATC 1 cut(s) 268
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 292, 433
MalI GATC 3 cut(s) 84, 159, 276
MboI GATC 3 cut(s) 82, 157, 274
MboII GAAGA 3 cut(s) 194, 245, 314
MfeI CAATTG 1 cut(s) 413
MluCI AATT 4 cut(s) 172, 193, 240, 413
MlyI GAGTC 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 2 cut(s) 354, 377
MroXI GAANNNNTTC 1 cut(s) 244
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 2 cut(s) 397, 424
NdeII GATC 3 cut(s) 82, 157, 274
NlaIII CATG 2 cut(s) 93, 168
NmuCI GTSAC 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 2 cut(s) 397, 424
PdmI GAANNNNTTC 1 cut(s) 244
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 353
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 297
Sau3AI GATC 3 cut(s) 82, 157, 274
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 1 cut(s) 183
SetI ASST 6 cut(s) 121, 253, 282, 355, 369, 433
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 2 cut(s) 213, 348
SinI GGWCC 1 cut(s) 353
Sse9I AATT 4 cut(s) 172, 193, 240, 413
TaiI ACGT 1 cut(s) 253
TasI AATT 4 cut(s) 172, 193, 240, 413
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.