RLG00000009088

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000224
Physical Location & Seq
Reverse (-)
46354174 .. 46355577
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009088

Sequence Viewer

Length: 363 bp
ATGGTTAACAAGTTTGACATTGACATGTCTCTCCCTTGGGTCGCGAGATATATTCCAATTAACTGTTTGATATTTCATAATAATTTTCATATTCGTGAGAAGAATGCTATAAATAGGTCAAAGTTGACACATCACCACAAAGCTGGGTCAAAGTCATTTATGTCCCACCAAGAGCAAATTGCAGCACAGACTGGAGAGATGAAAGGTGCAATTGATCGCTTTGAAACAGAGTACAAAAGCACTAAAAAAGGTTGGGACATGGGAGCAAAAGCAAAATGGGAAAGTCACTTGTTAACGATGCATACGTATGATGAAATGATTAAGATGCGAATTGAGACAACTCAACTTGAGAACAATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

121

Amino Acids

14.17

Weight (kDa)

9.27

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AfaI GTAC 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 33, 329
ApeKI GCWGC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 125
BbvI GCAGC 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 33, 329
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmsI GCATC 2 cut(s) 288, 315
BpmI CTGGAG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 148, 269
BsmAI GTCTC 2 cut(s) 33, 329
BsmFI GGGAC 2 cut(s) 148, 269
BsmI GAATGC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 214
Bsp68I TCGCGA 1 cut(s) 44
BspFNI CGCG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 306
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 2 cut(s) 33, 329
BstMBI GATC 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 28
BstSNI TACGTA 1 cut(s) 306
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 143
BtuMI TCGCGA 1 cut(s) 44
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 25, 259
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
CviQI GTAC 1 cut(s) 232
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco105I TACGTA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 28, 262
FaiI YATR 9 cut(s) 26, 51, 78, 90, 110, 161, 260, 303, 309
FaqI GGGAC 2 cut(s) 148, 269
FatI CATG 2 cut(s) 24, 258
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 213
Hin1II CATG 2 cut(s) 28, 262
HincII GTYRAC 3 cut(s) 7, 126, 294
HindII GTYRAC 3 cut(s) 7, 126, 294
HpaI GTTAAC 2 cut(s) 7, 294
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 7, 126, 294
Hpy188III TCNNGA 2 cut(s) 43, 95
Hpy8I GTNNAC 3 cut(s) 7, 126, 294
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 182, 209, 301
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 2 cut(s) 28, 262
KspAI GTTAAC 2 cut(s) 7, 294
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 2 cut(s) 129, 177
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 288, 315
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 112
MfeI CAATTG 1 cut(s) 210
MluCI AATT 5 cut(s) 57, 82, 177, 210, 330
Mph1103I ATGCAT 1 cut(s) 303
MseI TTAA 4 cut(s) 6, 60, 293, 321
MslI CAYNNNNRTG 3 cut(s) 23, 93, 306
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 109
MvnI CGCG 1 cut(s) 44
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 28, 262
NmuCI GTSAC 1 cut(s) 284
NruI TCGCGA 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 1 cut(s) 28
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PctI GAATGC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 306
PscI ACATGT 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 143
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 3 cut(s) 23, 93, 306
SaqAI TTAA 4 cut(s) 6, 60, 293, 321
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 214
SetI ASST 5 cut(s) 119, 145, 208, 253, 308
SfaNI GCATC 2 cut(s) 288, 315
SmiMI CAYNNNNRTG 3 cut(s) 23, 93, 306
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SnaBI TACGTA 1 cut(s) 306
Sse9I AATT 5 cut(s) 57, 82, 177, 210, 330
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 308
TasI AATT 5 cut(s) 57, 82, 177, 210, 330
TatI WGTACW 1 cut(s) 231
Tru1I TTAA 4 cut(s) 6, 60, 293, 321
Tru9I TTAA 4 cut(s) 6, 60, 293, 321
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 4 cut(s) 65, 77, 215, 327
XceI RCATGY 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.