Rroxscaffold_3G00223630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000224
Physical Location & Seq
Forward (+)
6753856 .. 6758647
4792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223630.1

Sequence Viewer

Length: 480 bp
ATGGGAACGCCCCATCTCGCCAAACAAACCCATCCCCGCATTAGATCGAGAGGACCTAACCCGCATCGACCGATCCGATCATATCCGAGCCTCGCCGGCACGACCACGGCACCACCCCACCACCTTCGAACCTCGCGCCCCCAAGTCGCGTCGCGGACGTACCATCAAGGGACACACCGAGCCCGACATCGCCCTCGATCTCCCCTCTCCTCGCGTCACACCCCGCTACCGAAACCTCTCCGATCCAAACCGTACATCGATCTAGAGTCCCGCTCTCTCCCGGACCCACGCAGGCTAACAAAGTCCCGTCCGACGAGGCTAAAAGGCTCGCCGCCGGACAGGGAGCTGTCCCGAACAAGTCATCACAAGATGACCTCAAACAGTTCCAGAGGAGTCCTACTCACTCAATACACGGTTGACCTTGCAGACCGGTTCATTGACTTGCTCTCCCTAGCAAAGCTTGCGCCTCCACCGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.96

Weight (kDa)

11.9

Isoelectric Point (pI)

62.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 273
AccII CGCG 4 cut(s) 136, 149, 154, 214
AciI CCGC 6 cut(s) 37, 62, 154, 224, 271, 332
AclWI GGATC 2 cut(s) 67, 237
AfaI GTAC 2 cut(s) 161, 254
AgeI ACCGGT 1 cut(s) 429
AluBI AGCT 2 cut(s) 346, 460
AluI AGCT 2 cut(s) 346, 460
AlwI GGATC 2 cut(s) 67, 237
AsiGI ACCGGT 1 cut(s) 429
AspLEI GCGC 2 cut(s) 138, 466
AspS9I GGNCC 2 cut(s) 53, 283
AsuC2I CCSGG 1 cut(s) 281
AsuII TTCGAA 1 cut(s) 127
AvaII GGWCC 2 cut(s) 53, 283
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 184
BccI CCATC 3 cut(s) 21, 39, 171
BceAI ACGGC 1 cut(s) 123
BcnI CCSGG 1 cut(s) 281
BfaI CTAG 2 cut(s) 263, 452
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 2 cut(s) 53, 283
BmgT120I GGNCC 2 cut(s) 53, 283
BmiI GGNNCC 2 cut(s) 111, 285
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 73
BplI GAGNNNNNCTC 4 cut(s) 257, 289, 384, 416
Bpu14I TTCGAA 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bse118I RCCGGY 2 cut(s) 95, 429
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 31
BseRI GAGGAG 2 cut(s) 199, 405
Bsh1236I CGCG 4 cut(s) 136, 149, 154, 214
Bsh1285I CGRYCG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 109
BshTI ACCGGT 1 cut(s) 429
BshVI ATCGAT 1 cut(s) 258
BsiEI CGRYCG 1 cut(s) 71
BsiSI CCGG 4 cut(s) 96, 281, 335, 430
BslFI GGGAC 4 cut(s) 184, 253, 289, 334
BsmFI GGGAC 4 cut(s) 184, 253, 289, 334
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 6 cut(s) 44, 72, 77, 197, 242, 259
BspACI CCGC 6 cut(s) 37, 62, 154, 224, 271, 332
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 4 cut(s) 136, 149, 154, 214
BspLI GGNNCC 2 cut(s) 111, 285
BspPI GGATC 2 cut(s) 67, 237
BspT104I TTCGAA 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 273
BsrFI RCCGGY 2 cut(s) 95, 429
BssAI RCCGGY 2 cut(s) 95, 429
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 6 cut(s) 44, 72, 77, 197, 242, 259
Bst4CI ACNGT 4 cut(s) 252, 383, 415, 474
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 4 cut(s) 97, 293, 329, 462
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 4 cut(s) 136, 149, 154, 214
BstHHI GCGC 2 cut(s) 138, 466
BstKTI GATC 6 cut(s) 47, 75, 80, 200, 245, 262
BstMBI GATC 6 cut(s) 44, 72, 77, 197, 242, 259
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 96, 461
BstSCI CCNGG 1 cut(s) 279
BstUI CGCG 4 cut(s) 136, 149, 154, 214
Bsu15I ATCGAT 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 31
Cac8I GCNNGC 4 cut(s) 97, 293, 329, 462
CfoI GCGC 2 cut(s) 138, 466
Cfr10I RCCGGY 2 cut(s) 95, 429
Cfr13I GGNCC 2 cut(s) 53, 283
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 2 cut(s) 138, 203
Csp6I GTAC 2 cut(s) 160, 253
CspAI ACCGGT 1 cut(s) 429
CviJI RGCY 7 cut(s) 90, 182, 295, 319, 327, 346, 460
CviKI_1 RGCY 7 cut(s) 90, 182, 295, 319, 327, 346, 460
CviQI GTAC 2 cut(s) 160, 253
DpnI GATC 6 cut(s) 46, 74, 79, 199, 244, 261
DpnII GATC 6 cut(s) 44, 72, 77, 197, 242, 259
Eco24I GRGCYC 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 53, 283
EcoO109I RGGNCCY 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 184
FaiI YATR 1 cut(s) 82
FaqI GGGAC 4 cut(s) 184, 253, 289, 334
FauI CCCGC 4 cut(s) 44, 69, 231, 278
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 1 cut(s) 18
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 2 cut(s) 263, 452
GlaI GCGC 2 cut(s) 137, 465
GluI GCNGC 1 cut(s) 332
HapII CCGG 4 cut(s) 96, 281, 335, 430
HgaI GACGC 2 cut(s) 138, 203
HhaI GCGC 2 cut(s) 138, 466
Hin6I GCGC 2 cut(s) 136, 464
HinP1I GCGC 2 cut(s) 136, 464
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 266, 393
HpaII CCGG 4 cut(s) 96, 281, 335, 430
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 4 cut(s) 77, 87, 242, 312
Hpy188III TCNNGA 4 cut(s) 48, 263, 351, 387
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 2 cut(s) 154, 316
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 4 cut(s) 252, 383, 415, 474
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 461
HpySE526I ACGT 1 cut(s) 158
HspAI GCGC 2 cut(s) 136, 464
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 6 cut(s) 44, 72, 77, 197, 242, 259
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 7 cut(s) 109, 277, 294, 325, 348, 400, 443
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 263, 452
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 215
MalI GATC 6 cut(s) 46, 74, 79, 199, 244, 261
MbiI CCGCTC 1 cut(s) 273
MboI GATC 6 cut(s) 44, 72, 77, 197, 242, 259
MhlI GDGCHC 1 cut(s) 184
MlyI GAGTC 2 cut(s) 275, 402
MmeI TCCRAC 1 cut(s) 335
MroNI GCCGGC 1 cut(s) 95
MspI CCGG 4 cut(s) 96, 281, 335, 430
MspR9I CCNGG 1 cut(s) 281
MvnI CGCG 4 cut(s) 136, 149, 154, 214
MwoI GCNNNNNNNGC 2 cut(s) 96, 461
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 281
NdeII GATC 6 cut(s) 44, 72, 77, 197, 242, 259
NgoMIV GCCGGC 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 111, 285
NmuCI GTSAC 1 cut(s) 215
NspV TTCGAA 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 279
PinAI ACCGGT 1 cut(s) 429
PkrI GCNGC 1 cut(s) 333
PleI GAGTC 2 cut(s) 274, 401
PpsI GAGTC 2 cut(s) 274, 401
PpuMI RGGWCCY 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 111, 285
PspPI GGNCC 2 cut(s) 53, 283
PspPPI RGGWCCY 1 cut(s) 53
RsaI GTAC 2 cut(s) 161, 254
RsaNI GTAC 2 cut(s) 160, 253
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 6 cut(s) 44, 72, 77, 197, 242, 259
Sau96I GGNCC 2 cut(s) 53, 283
SchI GAGTC 2 cut(s) 275, 402
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 184
SetI ASST 9 cut(s) 58, 126, 134, 161, 238, 348, 377, 423, 462
SfaNI GCATC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 127
SinI GGWCC 2 cut(s) 53, 283
SsiI CCGC 6 cut(s) 37, 62, 154, 224, 271, 332
SspMI CTAG 2 cut(s) 263, 452
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 4 cut(s) 252, 383, 415, 474
TaiI ACGT 1 cut(s) 161
TaqI TCGA 5 cut(s) 47, 67, 127, 196, 258
TaqII GACCGA 1 cut(s) 85
TauI GCSGC 1 cut(s) 334
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 53, 283
XbaI TCTAGA 1 cut(s) 262
XspI CTAG 2 cut(s) 263, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.