Rorug05G0374800

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000224
Physical Location & Seq
Reverse (-)
50555907 .. 50557253
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0374800.1

Sequence Viewer

Length: 1347 bp
ATGGAAGCTAGACTTGTGTTGGAGGCTGGTTTACACTGGAGGATTGGTAATGGGGCTTCTGTGAGCATATGGGACAATGACTGGATCCCTACTATTTCTCACCATTCTTTGATCAAACCCCCGGAGACTGTTTTTGACAGAGTCGCTGATTTAATTGATTCGAATACTTGGTCATGGGATGAAGCAGCTGTTCATACTTGTTTTGAACCCCAGGTGGAGGCCCGAGTTCTCTCCATCCCTCTCAGTCGTCGTTTTGGTCATGATCGTGTGGCCTGGAAGCTCCATAAGAAGGGTTTCTTCACTGTTAAATCAGCGTATGCAATAGCTAGAGACATTTCGATTGGTAATGTTTTCGCTTCCTCTTCTAACGGGGATGTTTATGGTCCGATTTGGAGAGCTTTGTGGAAGGCTAAAGTTCCTGGTAAAGTGGCTATATTTGGATGGAGAGTGGTTCAAAATCTCCTTCCCACTCGGGCTGCTTTAGCTAGGAAAGGTTATTCTGGTGATTTGAGGTGTGTGGTTTGTTCTAATGCAGTTGAGACTGTGGAACACTTGTTTAGTCAATGCAGTCTGACTCGTGAGATTGTAGGAGCTCCTCCTTTCTCCATTCCTCCGTCCTCCACCTCTTGGAAAGATTGGTTCTTAGAAAGAGTCACTTCGCTGTCAGCAACTTTTTTTGATAAACTACTCGTTCTACTATGGAGTCTTTGGCGGAATAGGAATGAAAAGCTCTGGAGGGACCGGTCTCAAACAAGTTCTGGTATTGTGGCCTCGGCGATGGCTTGGTATGAGGAATATTCTCAAGCCAATATGGTGTCAGTAGTAGTAGAACGTAATGGACCTACTTTCCGGAAACAATGGCATGCTCTGAGGTCAGATTTTTATAAACTGAATGTAGATGGGGCTTACCTTCCCTCGGTCCAGTTTGGAGGCACAGGTGGTGTCTTGAGGAATACTTTGGGTGTCTTCATTGTTGGCTTTTCGTATAGAGTTGCCTTTGTTAGCTCTGCTCTACATGCGGAACTCTTAGCTATAAAGTATGGTTTGGAACTTTTACAAGCATTGGATGTCACTCAGGTAATCTTGGAGAGTGACTGCCTATCAGCTGTACAGGCCATCAACTCGGTGGTGGAGGATATGTCTGATTTAGGCGCCCTAATCTCTGAAATTAAAGGCCTTCTGGCTGCAGTGGGGGAGGTAACTGTTAGTTTTGCACCTAGGCAAGCTAACACAGTTGCTCACCGTTTAGCTAGTAATAGTTTTGAGACAGATTGTCATCTTGAGTGGTTTGTTCATGCTCCAGAGTTTGTACTGGATGCCCTCATGTACGATTTTAATCGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

448

Amino Acids

50.04

Weight (kDa)

6.64

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 100 - 195 4e-18 zinc-binding in reverse transcriptase
RVT_3 PF13456 298 - 418 2.6e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 1151
AccB7I CCANNNNNTGG 1 cut(s) 627
AccIII TCCGGA 1 cut(s) 849
AciI CCGC 2 cut(s) 712, 1019
AclWI GGATC 2 cut(s) 79, 92
AcyI GRCGYC 1 cut(s) 1152
AfaI GTAC 3 cut(s) 1110, 1311, 1328
AfiI CCNNNNNNNGG 4 cut(s) 217, 289, 627, 916
AgeI ACCGGT 1 cut(s) 741
AgsI TTSAA 2 cut(s) 206, 455
AhdI GACNNNNNGTC 1 cut(s) 1272
AjnI CCWGG 3 cut(s) 210, 272, 418
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 5 cut(s) 119, 324, 533, 750, 1259
AlwI GGATC 2 cut(s) 79, 92
Ama87I CYCGRG 2 cut(s) 222, 471
Aor13HI TCCGGA 1 cut(s) 849
AoxI GGCC 5 cut(s) 219, 270, 768, 1113, 1174
ApeKI GCWGC 3 cut(s) 185, 476, 1184
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AsiGI ACCGGT 1 cut(s) 741
Asp700I GAANNNNTTC 1 cut(s) 293
AspA2I CCTAGG 1 cut(s) 1217
AspLEI GCGC 1 cut(s) 1154
AspS9I GGNCC 5 cut(s) 220, 383, 739, 839, 919
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 3 cut(s) 92, 515, 1232
AsuII TTCGAA 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 222, 471
AvaII GGWCC 4 cut(s) 383, 739, 839, 919
AvrII CCTAGG 1 cut(s) 1217
BamHI GGATCC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 1151
BanII GRGCYC 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 958
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 197, 463, 1171
BccI CCATC 5 cut(s) 242, 435, 772, 893, 1124
BciT130I CCWGG 3 cut(s) 212, 274, 420
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 5 cut(s) 119, 324, 533, 750, 1259
BfaI CTAG 5 cut(s) 9, 327, 486, 1218, 1251
BfmI CTRYAG 1 cut(s) 1185
BfoI RGCGCY 1 cut(s) 1155
BisI GCNGC 3 cut(s) 186, 477, 1185
BlnI CCTAGG 1 cut(s) 1217
BlsI GCNGC 3 cut(s) 187, 478, 1186
Bme1390I CCNGG 4 cut(s) 122, 212, 274, 420
Bme18I GGWCC 4 cut(s) 383, 739, 839, 919
BmeRI GACNNNNNGTC 1 cut(s) 1272
BmeT110I CYCGRG 2 cut(s) 222, 471
BmgT120I GGNCC 5 cut(s) 220, 383, 739, 839, 919
BmiI GGNNCC 3 cut(s) 86, 740, 1153
BmrFI CCNGG 4 cut(s) 122, 212, 274, 420
BmsI GCATC 1 cut(s) 1306
BpiI GAAGAC 1 cut(s) 958
BpmI CTGGAG 3 cut(s) 58, 754, 1284
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 3 cut(s) 786, 967, 1301
BpuMI CCSGG 1 cut(s) 122
BsaBI GATNNNNATC 2 cut(s) 1275, 1335
BsaHI GRCGYC 1 cut(s) 1152
BsaI GGTCTC 1 cut(s) 750
BsaJI CCNNGG 5 cut(s) 120, 210, 771, 915, 1217
BsaWI WCCGGW 2 cut(s) 741, 849
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 1124, 1154
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 289, 627, 916
Bse118I RCCGGY 1 cut(s) 741
Bse1I ACTGG 4 cut(s) 41, 86, 922, 1317
Bse8I GATNNNNATC 2 cut(s) 1275, 1335
BseAI TCCGGA 1 cut(s) 849
BseBI CCWGG 3 cut(s) 212, 274, 420
BseDI CCNNGG 5 cut(s) 120, 210, 771, 915, 1217
BseGI GGATG 6 cut(s) 184, 234, 379, 446, 1072, 1321
BseJI GATNNNNATC 2 cut(s) 1275, 1335
BseLI CCNNNNNNNGG 4 cut(s) 217, 289, 627, 916
BseMII CTCAG 3 cut(s) 256, 860, 1088
BseNI ACTGG 4 cut(s) 41, 86, 922, 1317
BseRI GAGGAG 1 cut(s) 585
BseXI GCAGC 3 cut(s) 197, 463, 1171
BshFI GGCC 5 cut(s) 221, 272, 770, 1115, 1176
BshNI GGYRCC 1 cut(s) 1151
BshTI ACCGGT 1 cut(s) 741
BsiHKAI GWGCWC 1 cut(s) 595
BsiHKCI CYCGRG 2 cut(s) 222, 471
BsiSI CCGG 3 cut(s) 122, 742, 850
BslFI GGGAC 2 cut(s) 86, 752
BslI CCNNNNNNNGG 4 cut(s) 217, 289, 627, 916
BsmAI GTCTC 5 cut(s) 119, 324, 533, 750, 1259
BsmFI GGGAC 2 cut(s) 86, 752
BsnI GGCC 5 cut(s) 221, 272, 770, 1115, 1176
Bso31I GGTCTC 1 cut(s) 750
BsoBI CYCGRG 2 cut(s) 222, 471
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 595
Bsp13I TCCGGA 1 cut(s) 849
Bsp1407I TGTACA 1 cut(s) 1108
Bsp143I GATC 3 cut(s) 84, 111, 262
BspACI CCGC 2 cut(s) 712, 1019
BspANI GGCC 5 cut(s) 221, 272, 770, 1115, 1176
BspCNI CTCAG 3 cut(s) 255, 861, 1087
BspEI TCCGGA 1 cut(s) 849
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 86, 740, 1153
BspMAI CTGCAG 1 cut(s) 1189
BspPI GGATC 2 cut(s) 79, 92
BspT104I TTCGAA 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 1151
BspTNI GGTCTC 1 cut(s) 750
BsrFI RCCGGY 1 cut(s) 741
BsrGI TGTACA 1 cut(s) 1108
BsrI ACTGG 4 cut(s) 41, 86, 922, 1317
BssAI RCCGGY 1 cut(s) 741
BssECI CCNNGG 5 cut(s) 120, 210, 771, 915, 1217
BssMI GATC 3 cut(s) 84, 111, 262
BssNI GRCGYC 1 cut(s) 1152
BssSI CACGAG 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 1217
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 3 cut(s) 212, 274, 420
Bst4CI ACNGT 6 cut(s) 130, 304, 544, 1204, 1234, 1244
Bst6I CTCTTC 1 cut(s) 367
BstACI GRCGYC 1 cut(s) 1152
BstAUI TGTACA 1 cut(s) 1108
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 864, 1224
BstDEI CTNAG 5 cut(s) 242, 643, 869, 1027, 1074
BstF5I GGATG 6 cut(s) 184, 234, 379, 446, 1072, 1321
BstH2I RGCGCY 1 cut(s) 1155
BstHHI GCGC 1 cut(s) 1154
BstKTI GATC 3 cut(s) 87, 114, 265
BstMAI GTCTC 5 cut(s) 119, 324, 533, 750, 1259
BstMBI GATC 3 cut(s) 84, 111, 262
BstMWI GCNNNNNNNGC 3 cut(s) 482, 1016, 1112
BstNI CCWGG 3 cut(s) 212, 274, 420
BstNSI RCATGY 2 cut(s) 866, 1019
BstSCI CCNGG 4 cut(s) 120, 210, 272, 418
BstSFI CTRYAG 1 cut(s) 1185
BstV1I GCAGC 3 cut(s) 197, 463, 1171
BstV2I GAAGAC 1 cut(s) 958
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 5 cut(s) 221, 272, 770, 1115, 1176
BtgZI GCGATG 1 cut(s) 791
BtsCI GGATG 6 cut(s) 184, 234, 379, 446, 1072, 1321
BtsI GCAGTG 1 cut(s) 1194
BtsIMutI CAGTG 3 cut(s) 34, 300, 1194
Cac8I GCNNGC 2 cut(s) 864, 1224
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 1154
Cfr10I RCCGGY 1 cut(s) 741
Cfr13I GGNCC 5 cut(s) 220, 383, 739, 839, 919
Csp6I GTAC 3 cut(s) 1109, 1310, 1327
CspAI ACCGGT 1 cut(s) 741
CviAII CATG 6 cut(s) 174, 260, 863, 1016, 1295, 1324
CviQI GTAC 3 cut(s) 1109, 1310, 1327
DdeI CTNAG 5 cut(s) 242, 643, 869, 1027, 1074
DinI GGCGCC 1 cut(s) 1153
DpnI GATC 3 cut(s) 86, 113, 264
DpnII GATC 3 cut(s) 84, 111, 262
DriI GACNNNNNGTC 1 cut(s) 1272
Eam1104I CTCTTC 1 cut(s) 367
Eam1105I GACNNNNNGTC 1 cut(s) 1272
EarI CTCTTC 1 cut(s) 367
EciI GGCGGA 1 cut(s) 727
Ecl136II GAGCTC 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 1217
Eco147I AGGCCT 1 cut(s) 1176
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 750
Eco47I GGWCC 4 cut(s) 383, 739, 839, 919
Eco53kI GAGCTC 1 cut(s) 593
Eco88I CYCGRG 2 cut(s) 222, 471
EcoICRI GAGCTC 1 cut(s) 593
EcoRII CCWGG 3 cut(s) 210, 272, 418
EcoT14I CCWWGG 1 cut(s) 1217
EcoT38I GRGCYC 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 1153
EheI GGCGCC 1 cut(s) 1153
ErhI CCWWGG 1 cut(s) 1217
FaeI CATG 6 cut(s) 177, 263, 866, 1019, 1298, 1327
FalI AAGNNNNNCTT 5 cut(s) 29, 281, 313, 640, 672
FaqI GGGAC 2 cut(s) 86, 752
FatI CATG 6 cut(s) 173, 259, 862, 1015, 1294, 1323
FauNDI CATATG 1 cut(s) 68
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 186, 477, 1185
FokI GGATG 6 cut(s) 191, 221, 386, 453, 1079, 1328
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 3 cut(s) 186, 477, 1185
FspBI CTAG 5 cut(s) 9, 327, 486, 1218, 1251
GlaI GCGC 1 cut(s) 1153
GluI GCNGC 3 cut(s) 186, 477, 1185
GsuI CTGGAG 3 cut(s) 58, 754, 1284
HaeII RGCGCY 1 cut(s) 1155
HaeIII GGCC 5 cut(s) 221, 272, 770, 1115, 1176
HapII CCGG 3 cut(s) 122, 742, 850
HhaI GCGC 1 cut(s) 1154
Hin1I GRCGYC 1 cut(s) 1152
Hin1II CATG 6 cut(s) 177, 263, 866, 1019, 1298, 1327
Hin6I GCGC 1 cut(s) 1152
HinP1I GCGC 1 cut(s) 1152
HinfI GANTC 5 cut(s) 141, 158, 574, 651, 703
HpaII CCGG 3 cut(s) 122, 742, 850
HphI GGTGA 3 cut(s) 92, 515, 1232
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 6 cut(s) 387, 573, 870, 877, 1144, 1165
Hpy188III TCNNGA 7 cut(s) 260, 578, 733, 850, 946, 1280, 1301
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 5 cut(s) 283, 400, 473, 920, 1187
HpyCH4III ACNGT 6 cut(s) 130, 304, 544, 1204, 1234, 1244
HpyCH4IV ACGT 1 cut(s) 832
HpyCH4V TGCA 5 cut(s) 320, 533, 567, 1187, 1214
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 1016, 1112
HpyF3I CTNAG 5 cut(s) 242, 643, 869, 1027, 1074
HpySE526I ACGT 1 cut(s) 832
Hsp92I GRCGYC 1 cut(s) 1152
Hsp92II CATG 6 cut(s) 177, 263, 866, 1019, 1298, 1327
HspAI GCGC 1 cut(s) 1152
KasI GGCGCC 1 cut(s) 1151
Kpn2I TCCGGA 1 cut(s) 849
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 3 cut(s) 84, 111, 262
LmnI GCTCC 4 cut(s) 285, 590, 598, 1303
Lsp1109I GCAGC 3 cut(s) 197, 463, 1171
LweI GCATC 1 cut(s) 1306
MaeI CTAG 5 cut(s) 9, 327, 486, 1218, 1251
MaeII ACGT 1 cut(s) 832
MaeIII GTNAC 4 cut(s) 652, 1069, 1091, 1198
MalI GATC 3 cut(s) 86, 113, 264
MboI GATC 3 cut(s) 84, 111, 262
MboII GAAGA 3 cut(s) 289, 354, 958
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 2 cut(s) 153, 1167
Mly113I GGCGCC 1 cut(s) 1152
MlyI GAGTC 4 cut(s) 150, 568, 660, 712
MroI TCCGGA 1 cut(s) 849
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 4 cut(s) 152, 306, 1170, 1335
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 2 cut(s) 188, 1106
MspI CCGG 3 cut(s) 122, 742, 850
MspR9I CCNGG 4 cut(s) 122, 212, 274, 420
MvaI CCWGG 3 cut(s) 212, 274, 420
MwoI GCNNNNNNNGC 3 cut(s) 482, 1016, 1112
NarI GGCGCC 1 cut(s) 1152
NciI CCSGG 1 cut(s) 122
NdeI CATATG 1 cut(s) 68
NdeII GATC 3 cut(s) 84, 111, 262
NlaIII CATG 6 cut(s) 177, 263, 866, 1019, 1298, 1327
NlaIV GGNNCC 3 cut(s) 86, 740, 1153
NmeAIII GCCGAG 1 cut(s) 752
NmuCI GTSAC 3 cut(s) 652, 1069, 1091
NspI RCATGY 2 cut(s) 866, 1019
NspV TTCGAA 1 cut(s) 161
PaeI GCATGC 1 cut(s) 866
PagI TCATGA 1 cut(s) 259
PceI AGGCCT 1 cut(s) 1176
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 627
PinAI ACCGGT 1 cut(s) 741
PkrI GCNGC 3 cut(s) 187, 478, 1186
PleI GAGTC 4 cut(s) 149, 568, 659, 711
PluTI GGCGCC 1 cut(s) 1155
PpsI GAGTC 4 cut(s) 149, 568, 659, 711
PsiI TTATAA 1 cut(s) 885
Psp124BI GAGCTC 1 cut(s) 595
Psp6I CCWGG 3 cut(s) 210, 272, 418
PspGI CCWGG 3 cut(s) 210, 272, 418
PspN4I GGNNCC 3 cut(s) 86, 740, 1153
PspPI GGNCC 5 cut(s) 220, 383, 739, 839, 919
PstI CTGCAG 1 cut(s) 1189
PsuI RGATCY 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 140
PvuII CAGCTG 2 cut(s) 188, 1106
RsaI GTAC 3 cut(s) 1110, 1311, 1328
RsaNI GTAC 3 cut(s) 1109, 1310, 1327
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 595
SaqAI TTAA 4 cut(s) 152, 306, 1170, 1335
SatI GCNGC 3 cut(s) 186, 477, 1185
Sau3AI GATC 3 cut(s) 84, 111, 262
Sau96I GGNCC 5 cut(s) 220, 383, 739, 839, 919
SchI GAGTC 4 cut(s) 150, 568, 660, 712
ScrFI CCNGG 4 cut(s) 122, 212, 274, 420
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 1 cut(s) 1306
SfcI CTRYAG 1 cut(s) 1185
SfoI GGCGCC 1 cut(s) 1153
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 4 cut(s) 383, 739, 839, 919
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 3 cut(s) 801, 946, 1280
SmoI CTYRAG 3 cut(s) 801, 946, 1280
SphI GCATGC 1 cut(s) 866
Sse9I AATT 2 cut(s) 153, 1167
SseBI AGGCCT 1 cut(s) 1176
SsiI CCGC 2 cut(s) 712, 1019
SspDI GGCGCC 1 cut(s) 1151
SspI AATATT 1 cut(s) 797
SspMI CTAG 5 cut(s) 9, 327, 486, 1218, 1251
SstI GAGCTC 1 cut(s) 595
StuI AGGCCT 1 cut(s) 1176
StyD4I CCNGG 4 cut(s) 120, 210, 272, 418
StyI CCWWGG 1 cut(s) 1217
TaaI ACNGT 6 cut(s) 130, 304, 544, 1204, 1234, 1244
TaiI ACGT 1 cut(s) 835
TaqI TCGA 2 cut(s) 161, 338
TaqII GACCGA 1 cut(s) 907
TasI AATT 2 cut(s) 153, 1167
TatI WGTACW 2 cut(s) 1108, 1309
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 4 cut(s) 152, 306, 1170, 1335
Tru9I TTAA 4 cut(s) 152, 306, 1170, 1335
TscAI CASTG 3 cut(s) 41, 307, 1194
TseFI GTSAC 3 cut(s) 652, 1069, 1091
TseI GCWGC 3 cut(s) 185, 476, 1184
Tsp45I GTSAC 3 cut(s) 652, 1069, 1091
TspDTI ATGAA 5 cut(s) 182, 195, 738, 958, 1283
TspGWI ACGGA 1 cut(s) 603
TspRI CASTG 3 cut(s) 41, 307, 1194
Tth111I GACNNNGTC 1 cut(s) 140
Van91I CCANNNNNTGG 1 cut(s) 627
VpaK11BI GGWCC 4 cut(s) 383, 739, 839, 919
XceI RCATGY 2 cut(s) 866, 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 1123
XmaJI CCTAGG 1 cut(s) 1217
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 5 cut(s) 9, 327, 486, 1218, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.