Rorug05G0375000

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000224
Physical Location & Seq
Forward (+)
50578827 .. 50581175
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0375000.1

Sequence Viewer

Length: 627 bp
ATGGTGAGTTTGAATTCGGAATTGGTGCGGAAGCTGGAGTCGGCGCTTGGGGTTTCGCTGGGAGGCTCGGTGACTGACATGGCGGTGGTGATAGCGATGACTTCAATTGAGTCGATAATTGGGTTTTTGGTGGTGCTGTGGCGGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGTGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCGTCGGGCAAGACTAGGGTGACTATTTTCTCTGGGACTCAGACCGGCACCGCTGAAGGTTTCGCCAAGGTAAGTCTGAGGTTTGTGGGGTTAATTGAGTGGATTGAATCTTTGGTAAAATGTTGTTGCATTCGGATTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAGGACAAGATTTGAAGGTACAAGATTTCAAGATTGTTGCTCTGTATCATTGACTGAATATGTTGCTCTGTATCATTGCTTTGTATATGTTGCAAATCTCAACAATATTCTCGCATTGTATGTCCAGGTACTGGATGCAAAGCCTCTTTTGAAGGAGGCCCTTCAAGCCGAAGTTGGACTGCCAGTGGACAGGGACATCCCATTAATAGGCTTCATTGGTAGGCTAGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

208

Amino Acids

22.86

Weight (kDa)

5.64

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 187, 269
AccB7I CCANNNNNTGG 1 cut(s) 523
AciI CCGC 5 cut(s) 28, 83, 142, 191, 273
AclWI GGATC 2 cut(s) 373, 384
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 412, 522
AfiI CCNNNNNNNGG 2 cut(s) 523, 599
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 7 cut(s) 13, 105, 329, 407, 422, 544, 557
AhlI ACTAGT 1 cut(s) 161
AjnI CCWGG 1 cut(s) 516
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 34, 181
AluI AGCT 2 cut(s) 34, 181
AlwI GGATC 2 cut(s) 373, 384
AlwNI CAGNNNCTG 1 cut(s) 523
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 13
AseI ATTAAT 1 cut(s) 596
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 550
AsuHPI GGTGA 5 cut(s) 16, 82, 100, 184, 253
BanI GGYRCC 2 cut(s) 187, 269
BbvI GCAGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 518
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 3 cut(s) 162, 237, 617
BfoI RGCGCY 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 194
BisI GCNGC 2 cut(s) 179, 191
BlsI GCNGC 2 cut(s) 180, 192
Bme1390I CCNGG 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 2 cut(s) 189, 271
BmrFI CCNGG 1 cut(s) 518
BmsI GCATC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 2 cut(s) 523, 599
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 2 cut(s) 528, 575
Bse3DI GCAATG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 532, 588
BseLI CCNNNNNNNGG 2 cut(s) 523, 599
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 3 cut(s) 275, 290, 394
BseNI ACTGG 2 cut(s) 528, 575
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 551
BshNI GGYRCC 2 cut(s) 187, 269
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 2 cut(s) 271, 599
BslI CCNNNNNNNGG 2 cut(s) 523, 599
BsmFI GGGAC 2 cut(s) 271, 599
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 551
Bsp143I GATC 3 cut(s) 146, 365, 376
BspACI CCGC 5 cut(s) 28, 83, 142, 191, 273
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 3 cut(s) 274, 291, 393
BspLI GGNNCC 2 cut(s) 189, 271
BspPI GGATC 2 cut(s) 373, 384
BspT107I GGYRCC 2 cut(s) 187, 269
BspTI CTTAAG 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 2 cut(s) 528, 575
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 3 cut(s) 146, 365, 376
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 518
BstAFI CTTAAG 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 261, 299, 380
BstF5I GGATG 2 cut(s) 532, 588
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 149, 368, 379
BstMBI GATC 3 cut(s) 146, 365, 376
BstMWI GCNNNNNNNGC 2 cut(s) 187, 557
BstNI CCWGG 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 365, 376
BstYI RGATCY 2 cut(s) 365, 376
BsuRI GGCC 1 cut(s) 551
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 2 cut(s) 532, 588
BtsIMutI CAGTG 1 cut(s) 582
CaiI CAGNNNCTG 1 cut(s) 523
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 550
CseI GACGC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 411, 521
CviAII CATG 1 cut(s) 79
CviJI RGCY 8 cut(s) 34, 66, 181, 535, 551, 560, 603, 616
CviKI_1 RGCY 8 cut(s) 34, 66, 181, 535, 551, 560, 603, 616
CviQI GTAC 2 cut(s) 411, 521
DdeI CTNAG 3 cut(s) 261, 299, 380
DpnI GATC 3 cut(s) 148, 367, 378
DpnII GATC 3 cut(s) 146, 365, 376
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 82
FaiI YATR 6 cut(s) 80, 374, 453, 478, 480, 513
FaqI GGGAC 2 cut(s) 271, 599
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 179, 191
FokI GGATG 2 cut(s) 539, 575
Fsp4HI GCNGC 2 cut(s) 179, 191
FspBI CTAG 3 cut(s) 162, 237, 617
GlaI GCGC 1 cut(s) 45
GluI GCNGC 2 cut(s) 179, 191
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 1 cut(s) 551
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 213
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 4 cut(s) 38, 110, 259, 329
HpaII CCGG 1 cut(s) 267
HphI GGTGA 5 cut(s) 16, 82, 100, 184, 253
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 6 cut(s) 19, 154, 264, 300, 357, 383
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 1 cut(s) 580
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 4 cut(s) 272, 401, 538, 563
HpyCH4V TGCA 3 cut(s) 351, 485, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 557
HpyF3I CTNAG 3 cut(s) 261, 299, 380
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 3 cut(s) 146, 365, 376
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 517
MaeI CTAG 3 cut(s) 162, 237, 617
MaeIII GTNAC 2 cut(s) 70, 241
MalI GATC 3 cut(s) 148, 367, 378
MboI GATC 3 cut(s) 146, 365, 376
MboII GAAGA 1 cut(s) 218
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 2 cut(s) 365, 376
MluCI AATT 5 cut(s) 13, 20, 105, 117, 315
MlyI GAGTC 3 cut(s) 47, 119, 253
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 8 cut(s) 56, 193, 196, 211, 294, 541, 546, 613
MseI TTAA 3 cut(s) 195, 314, 596
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 2 cut(s) 181, 275
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 518
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 518
MwoI GCNNNNNNNGC 2 cut(s) 187, 557
NdeII GATC 3 cut(s) 146, 365, 376
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 189, 271
NmuCI GTSAC 2 cut(s) 70, 241
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 523
PkrI GCNGC 2 cut(s) 180, 192
PleI GAGTC 3 cut(s) 46, 118, 253
PpsI GAGTC 3 cut(s) 46, 118, 253
PshBI ATTAAT 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 516
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 2 cut(s) 189, 271
PspPI GGNCC 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 523
PsuI RGATCY 2 cut(s) 365, 376
PvuII CAGCTG 1 cut(s) 181
RsaI GTAC 2 cut(s) 412, 522
RsaNI GTAC 2 cut(s) 411, 521
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 3 cut(s) 195, 314, 596
SatI GCNGC 2 cut(s) 179, 191
Sau3AI GATC 3 cut(s) 146, 365, 376
Sau96I GGNCC 1 cut(s) 550
SchI GAGTC 3 cut(s) 47, 119, 253
ScrFI CCNGG 1 cut(s) 518
SetI ASST 8 cut(s) 36, 183, 222, 283, 294, 305, 412, 522
SfaNI GCATC 1 cut(s) 517
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 5 cut(s) 13, 20, 105, 117, 315
SsiI CCGC 5 cut(s) 28, 83, 142, 191, 273
SspI AATATT 1 cut(s) 499
SspMI CTAG 3 cut(s) 162, 237, 617
StyD4I CCNGG 1 cut(s) 516
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 113
TasI AATT 5 cut(s) 13, 20, 105, 117, 315
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 195, 314, 596
Tru9I TTAA 3 cut(s) 195, 314, 596
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 2 cut(s) 70, 241
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 2 cut(s) 70, 241
TspDTI ATGAA 1 cut(s) 595
TspRI CASTG 1 cut(s) 582
Van91I CCANNNNNTGG 1 cut(s) 523
Vha464I CTTAAG 1 cut(s) 194
VspI ATTAAT 1 cut(s) 596
XapI RAATTY 1 cut(s) 13
XspI CTAG 3 cut(s) 162, 237, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.