RchiOBHm_Chr5g0009841

Conserved gene of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000224
Physical Location & Seq
Forward (+)
6512889 .. 6516576
3688 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29069

Sequence Viewer

Length: 291 bp
ATGACAGTTAATGAAATTTGTACAAAAGTCCTTGGAGTCAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCCTAGATCTCCACCATCAAGGGTCTCTCACTCGTCGATAAATGAAATGTCTGAAAAGAACAAAGAGTTGCAAGAACAGCTTCAAGAGACCCAACACCTTGTAGGGAATCAACAACAAAAAATTGATGCACAAAATGAAGTGATCCAAAGATTGGAGGAGCAAACCAAAAAGTTTGAGGAGTTCATGGCTAACTTTTCCAGGCAACAGCCATCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

96

Amino Acids

10.93

Weight (kDa)

6.73

Isoelectric Point (pI)

69.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 223
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 100, 152
AlwI GGATC 1 cut(s) 208
AoxI GGCC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 71
BccI CCATC 2 cut(s) 94, 289
BciT130I CCWGG 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 100, 152
BfaI CTAG 1 cut(s) 75
BglII AGATCT 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 187
BsaI GGTCTC 2 cut(s) 100, 152
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 242, 263
BshFI GGCC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 2 cut(s) 100, 152
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 2 cut(s) 100, 152
Bsp1407I TGTACA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 77, 213
BspANI GGCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 208
BspTNI GGTCTC 2 cut(s) 100, 152
BsrGI TGTACA 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 2 cut(s) 77, 213
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 7
BstAUI TGTACA 1 cut(s) 20
BstKTI GATC 2 cut(s) 80, 216
BstMAI GTCTC 2 cut(s) 100, 152
BstMBI GATC 2 cut(s) 77, 213
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 21
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 1 cut(s) 256
CviJI RGCY 5 cut(s) 48, 72, 151, 260, 280
CviKI_1 RGCY 5 cut(s) 48, 72, 151, 260, 280
CviQI GTAC 1 cut(s) 21
DpnI GATC 2 cut(s) 79, 215
DpnII GATC 2 cut(s) 77, 213
Eco130I CCWWGG 1 cut(s) 31
Eco31I GGTCTC 2 cut(s) 100, 152
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 1 cut(s) 259
FaiI YATR 1 cut(s) 257
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 1 cut(s) 255
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 1 cut(s) 259
HinfI GANTC 2 cut(s) 36, 178
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 142, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 2 cut(s) 77, 213
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 3 cut(s) 30, 256, 283
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 75
MalI GATC 2 cut(s) 79, 215
MboI GATC 2 cut(s) 77, 213
MflI RGATCY 1 cut(s) 77
MluCI AATT 2 cut(s) 15, 192
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 2 cut(s) 220, 241
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 2 cut(s) 77, 213
NlaIII CATG 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 223
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 9
Sau3AI GATC 2 cut(s) 77, 213
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 271
SetI ASST 2 cut(s) 153, 171
SfaNI GCATC 1 cut(s) 187
Sse9I AATT 2 cut(s) 15, 192
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 1 cut(s) 107
TasI AATT 2 cut(s) 15, 192
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TspDTI ATGAA 4 cut(s) 27, 129, 222, 244
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.