Rroxscaffold_7G00184390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000224
Physical Location & Seq
Forward (+)
23602221 .. 23607901
5681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184390.1

Sequence Viewer

Length: 627 bp
ATGACAGATGATGAAATTTGTGCAAAAGTCCTCGGAGTCAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCCTAGACCTCCACCATTAAAGGTCTCTCATTTGTCGATAAATGAAATGTCCGAAAAGAACAAAAAGTTGCAAGAACAGCTTCGGGAGACCCAACACCTTGTAGGGACTCAACAACAAAAAATTGTTGCACAAAATGAGGTGATCCAAAGATTGGAGGAGCAAGCCAAAAAGTTTAAGGAGTTTATGGCTAACTTTTCCAGGCAACATCCATCAAGAGCCTCCAACTACATTTCCACAGGCCAACTATATGTACATGGCTTATCATGCACACTGCCATGCCATATCATCGAACCTGCAACAGTCTCGGATAAGAAGATTGAGAAATCGATCAATAATCCGACAGCCAGCCGCACCAGGTTGCAAATTGCAGAACTTGAAGCTCAAGATATTGAGATTGATTCGAAATCGGCTCAAACGGAGCCGGGTCCTCCGCCGTCACTACGGTCCATGTTGCGGCGCAAGGATGCCACCGGCGGCTGCGCAAGGTCTAGGCGAAGCTACCGGAGGTGGTCCGACGTCTTGAGGTGGCTTGAGGAGGGAGAGGTCTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.53

Weight (kDa)

9.26

Isoelectric Point (pI)

71.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 612
AatII GACGTC 1 cut(s) 591
Acc16I TGCGCA 1 cut(s) 553
Acc36I ACCTGC 2 cut(s) 373, 612
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 4 cut(s) 421, 503, 526, 546
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 223, 525
AgsI TTSAA 1 cut(s) 449
AjnI CCWGG 2 cut(s) 269, 425
AluBI AGCT 3 cut(s) 151, 452, 570
AluI AGCT 3 cut(s) 151, 452, 570
Alw26I GTCTC 3 cut(s) 100, 152, 379
AlwI GGATC 1 cut(s) 208
AoxI GGCC 2 cut(s) 70, 310
ApeKI GCWGC 1 cut(s) 549
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 2 cut(s) 531, 554
AspS9I GGNCC 4 cut(s) 71, 497, 516, 582
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 1 cut(s) 473
AvaII GGWCC 3 cut(s) 497, 516, 582
BbvI GCAGC 1 cut(s) 536
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 357, 391
BciT130I CCWGG 2 cut(s) 271, 427
BcnI CCSGG 1 cut(s) 495
BcoDI GTCTC 3 cut(s) 100, 152, 379
BfaI CTAG 2 cut(s) 75, 561
BfmI CTRYAG 1 cut(s) 619
BfuAI ACCTGC 2 cut(s) 373, 612
BisI GCNGC 4 cut(s) 421, 527, 547, 550
BlsI GCNGC 4 cut(s) 422, 528, 548, 551
Bme1390I CCNGG 3 cut(s) 271, 427, 495
Bme18I GGWCC 3 cut(s) 497, 516, 582
BmgT120I GGNCC 4 cut(s) 71, 497, 516, 582
BmiI GGNNCC 2 cut(s) 492, 498
BmrFI CCNGG 3 cut(s) 271, 427, 495
BmsI GCATC 1 cut(s) 526
Bpu14I TTCGAA 1 cut(s) 473
BpuEI CTTGAG 3 cut(s) 438, 613, 623
BpuMI CCSGG 1 cut(s) 495
Bsa29I ATCGAT 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 588
BsaI GGTCTC 2 cut(s) 100, 152
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 573
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 525
Bse118I RCCGGY 1 cut(s) 542
BseBI CCWGG 2 cut(s) 271, 427
BseCI ATCGAT 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 277, 541
BseLI CCNNNNNNNGG 2 cut(s) 223, 525
BseRI GAGGAG 2 cut(s) 242, 620
BseXI GCAGC 1 cut(s) 536
BshFI GGCC 2 cut(s) 72, 312
BshVI ATCGAT 1 cut(s) 398
BsiSI CCGG 3 cut(s) 494, 543, 574
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 223, 525
BsmAI GTCTC 3 cut(s) 100, 152, 379
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 2 cut(s) 72, 312
Bso31I GGTCTC 2 cut(s) 100, 152
Bsp119I TTCGAA 1 cut(s) 473
Bsp1407I TGTACA 1 cut(s) 322
Bsp143I GATC 2 cut(s) 213, 399
BspACI CCGC 4 cut(s) 421, 503, 526, 546
BspANI GGCC 2 cut(s) 72, 312
BspDI ATCGAT 1 cut(s) 398
BspLI GGNNCC 2 cut(s) 492, 498
BspMAI CTGCAG 1 cut(s) 623
BspMI ACCTGC 2 cut(s) 373, 612
BspPI GGATC 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 473
BspTNI GGTCTC 2 cut(s) 100, 152
BsrFI RCCGGY 1 cut(s) 542
BsrGI TGTACA 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 2 cut(s) 213, 399
BssNI GRCGYC 1 cut(s) 588
Bst2UI CCWGG 2 cut(s) 271, 427
Bst4CI ACNGT 2 cut(s) 373, 516
BstACI GRCGYC 1 cut(s) 588
BstAUI TGTACA 1 cut(s) 322
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 234, 418
BstF5I GGATG 2 cut(s) 277, 541
BstHHI GCGC 2 cut(s) 531, 554
BstKTI GATC 2 cut(s) 216, 402
BstMAI GTCTC 3 cut(s) 100, 152, 379
BstMBI GATC 2 cut(s) 213, 399
BstMWI GCNNNNNNNGC 2 cut(s) 148, 336
BstNI CCWGG 2 cut(s) 271, 427
BstSCI CCNGG 3 cut(s) 269, 425, 493
BstSFI CTRYAG 1 cut(s) 619
BstV1I GCAGC 1 cut(s) 536
Bsu15I ATCGAT 1 cut(s) 398
BsuRI GGCC 2 cut(s) 72, 312
BsuTUI ATCGAT 1 cut(s) 398
BtsCI GGATG 2 cut(s) 277, 541
BtsI GCAGTG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 341
BveI ACCTGC 2 cut(s) 373, 612
Cac8I GCNNGC 2 cut(s) 234, 418
CfoI GCGC 2 cut(s) 531, 554
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 4 cut(s) 71, 497, 516, 582
ClaI ATCGAT 1 cut(s) 398
CsiI ACCWGGT 1 cut(s) 425
Csp6I GTAC 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 4 cut(s) 326, 336, 348, 520
CviQI GTAC 1 cut(s) 323
DpnI GATC 2 cut(s) 215, 401
DpnII GATC 2 cut(s) 213, 399
EciI GGCGGA 1 cut(s) 492
Eco31I GGTCTC 2 cut(s) 100, 152
Eco47I GGWCC 3 cut(s) 497, 516, 582
EcoO109I RGGNCCY 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 269, 425
FaeI CATG 4 cut(s) 329, 339, 351, 523
FaiI YATR 8 cut(s) 257, 319, 321, 327, 337, 349, 354, 521
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 190
FatI CATG 4 cut(s) 325, 335, 347, 519
Fnu4HI GCNGC 4 cut(s) 421, 527, 547, 550
FokI GGATG 2 cut(s) 264, 548
Fsp4HI GCNGC 4 cut(s) 421, 527, 547, 550
FspBI CTAG 2 cut(s) 75, 561
FspI TGCGCA 1 cut(s) 553
GlaI GCGC 2 cut(s) 530, 553
GluI GCNGC 4 cut(s) 421, 527, 547, 550
HaeIII GGCC 2 cut(s) 72, 312
HapII CCGG 3 cut(s) 494, 543, 574
HhaI GCGC 2 cut(s) 531, 554
Hin1I GRCGYC 1 cut(s) 588
Hin1II CATG 4 cut(s) 329, 339, 351, 523
Hin6I GCGC 2 cut(s) 529, 552
HinP1I GCGC 2 cut(s) 529, 552
HinfI GANTC 3 cut(s) 36, 178, 470
HpaII CCGG 3 cut(s) 494, 543, 574
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 35, 124, 379, 411, 586
Hpy188III TCNNGA 4 cut(s) 155, 285, 455, 592
Hpy99I CGWCG 1 cut(s) 590
HpyCH4III ACNGT 2 cut(s) 373, 516
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 8 cut(s) 23, 142, 200, 339, 368, 433, 440, 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 336
HpySE526I ACGT 1 cut(s) 588
Hsp92I GRCGYC 1 cut(s) 588
Hsp92II CATG 4 cut(s) 329, 339, 351, 523
HspAI GCGC 2 cut(s) 529, 552
Kzo9I GATC 2 cut(s) 213, 399
LmnI GCTCC 2 cut(s) 229, 490
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 1 cut(s) 526
MabI ACCWGGT 1 cut(s) 425
MaeI CTAG 2 cut(s) 75, 561
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 507
MalI GATC 2 cut(s) 215, 401
MboI GATC 2 cut(s) 213, 399
MboII GAAGA 1 cut(s) 397
MluCI AATT 3 cut(s) 15, 192, 435
MlyI GAGTC 2 cut(s) 45, 172
MmeI TCCRAC 3 cut(s) 318, 434, 609
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 2 cut(s) 89, 246
MslI CAYNNNNRTG 1 cut(s) 346
MspI CCGG 3 cut(s) 494, 543, 574
MspR9I CCNGG 3 cut(s) 271, 427, 495
MvaI CCWGG 2 cut(s) 271, 427
MwoI GCNNNNNNNGC 2 cut(s) 148, 336
NciI CCSGG 1 cut(s) 495
NdeII GATC 2 cut(s) 213, 399
NlaIII CATG 4 cut(s) 329, 339, 351, 523
NlaIV GGNNCC 2 cut(s) 492, 498
NmuCI GTSAC 1 cut(s) 507
NsbI TGCGCA 1 cut(s) 553
NspV TTCGAA 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 470
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 4 cut(s) 422, 528, 548, 551
PleI GAGTC 2 cut(s) 44, 172
PpsI GAGTC 2 cut(s) 44, 172
PpuMI RGGWCCY 1 cut(s) 497
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 269, 425
PspGI CCWGG 2 cut(s) 269, 425
PspN4I GGNNCC 2 cut(s) 492, 498
PspPI GGNCC 4 cut(s) 71, 497, 516, 582
PspPPI RGGWCCY 1 cut(s) 497
PstI CTGCAG 1 cut(s) 623
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 2 cut(s) 89, 246
SatI GCNGC 4 cut(s) 421, 527, 547, 550
Sau3AI GATC 2 cut(s) 213, 399
Sau96I GGNCC 4 cut(s) 71, 497, 516, 582
SchI GAGTC 2 cut(s) 45, 172
ScrFI CCNGG 3 cut(s) 271, 427, 495
SexAI ACCWGGT 1 cut(s) 425
SfaNI GCATC 1 cut(s) 526
SfcI CTRYAG 1 cut(s) 619
SfuI TTCGAA 1 cut(s) 473
SgrAI CRCCGGYG 1 cut(s) 542
SinI GGWCC 3 cut(s) 497, 516, 582
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 3 cut(s) 453, 592, 602
SmoI CTYRAG 3 cut(s) 453, 592, 602
Sse9I AATT 3 cut(s) 15, 192, 435
SsiI CCGC 4 cut(s) 421, 503, 526, 546
SspMI CTAG 2 cut(s) 75, 561
StyD4I CCNGG 3 cut(s) 269, 425, 493
TaaI ACNGT 2 cut(s) 373, 516
TaiI ACGT 1 cut(s) 591
TaqI TCGA 4 cut(s) 107, 360, 398, 473
TasI AATT 3 cut(s) 15, 192, 435
TatI WGTACW 1 cut(s) 322
TauI GCSGC 3 cut(s) 423, 529, 549
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 89, 246
Tru9I TTAA 2 cut(s) 89, 246
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 507
TseI GCWGC 1 cut(s) 549
Tsp45I GTSAC 1 cut(s) 507
TspDTI ATGAA 2 cut(s) 27, 129
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 1 cut(s) 348
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 3 cut(s) 497, 516, 582
XapI RAATTY 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 2 cut(s) 75, 561
ZraI GACGTC 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.