Rorug06G0408900

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000224
Physical Location & Seq
Reverse (-)
55150535 .. 55152642
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0408900.1

Sequence Viewer

Length: 945 bp
ATGGCAATGTCTCTGGCCACTGAGCTCCAATCTTCAATCTGCGAGCCTCGCGCCGTTCTCGGCCCCGGTGGGAACAGAGTTAGGGTTTCGGAGGGACCTAAACACAAATACGAGGGACTCAAGAAGCCACCGCAGAGGCCGAGAAAAGAAATTCCGGAATCGGTTGTCCGGAAAAACGTTTCGGTAGACAGCTCGTGCTCTTCAGACACCTCTTCCACTGGCTCCTCTCCCAAAACGGCCAGTCCTAGAAGGACTGTAAGGCATAAGAGCTTGAGGCCTGCCAAGCTTGTTTCAAACGACGTCGTCAAGCCTGACGGTCCACCTAAGCGATGTGAATGGATTACAGCTTACTCCGACCCACATTATATTTCTTTCCACGATGAAGAATGGGGAATTCCAGTGTATGATGATAAGAAGCTGTTTGAACTACTCGTCCTTTCGCAATCTCTAGCAGAACTCAGTTGGCCTGAAATTCTTACCAAGAGGGACATATTCAGGAATCTTTTTGACAACTTTGATCCTTCATCCATTGCAAAGTTTGATGAGAAGAAGTTACTGTCACTCAAAGTAAATGGCATCCCAATTCTATCCCAACAAAAGCTCCGTGCAATCGTCGACAATGCTATACAAGTGGTCAAGATTCAGCAAGAGTTTGGTTCATTCAGTAAATATTGCTGGAGCTTTGTGAACCAGAAGGCGATCAACAATGGAGTTCGTTATGGACGTCAAGTACCAGTAAAGTCACCAAAAGCTGAAGTTATAAGCAAGGATTTGATGAAGAGAGGCTTCCGTTGTGTTGGTCCTACTGTCGTCTATTCATTCATGCAAGTAGCTGGGATTGTGAACGATCATCTTGTAACATGCTTCAGGCACAAAGTGTGCGATGCCAACACCAAGATGGATCCGAAACTTGATATCGAGAAGTCCAAGGATCTAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

314

Amino Acids

35.35

Weight (kDa)

9.51

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 117 - 291 2.7e-67 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 761
AatII GACGTC 2 cut(s) 303, 727
AccI GTMKAC 2 cut(s) 186, 615
AccII CGCG 1 cut(s) 51
AccIII TCCGGA 2 cut(s) 154, 168
AciI CCGC 1 cut(s) 131
AclI AACGTT 1 cut(s) 177
AclWI GGATC 4 cut(s) 512, 896, 909, 939
AcoI YGGCCR 2 cut(s) 15, 237
AcsI RAATTY 3 cut(s) 150, 393, 471
AcuI CTGAAG 3 cut(s) 186, 774, 850
AcyI GRCGYC 2 cut(s) 300, 724
AdeI CACNNNGTG 1 cut(s) 877
AfaI GTAC 1 cut(s) 732
AgsI TTSAA 3 cut(s) 36, 294, 425
AloI GAACNNNNNNTCC 2 cut(s) 417, 449
Alw21I GWGCWC 2 cut(s) 27, 200
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 4 cut(s) 512, 896, 909, 939
Aor13HI TCCGGA 2 cut(s) 154, 168
AoxI GGCC 6 cut(s) 15, 61, 137, 237, 275, 464
ApoI RAATTY 3 cut(s) 150, 393, 471
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 4 cut(s) 62, 95, 317, 800
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 735
AvaII GGWCC 3 cut(s) 95, 317, 800
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 901
BanII GRGCYC 1 cut(s) 27
BauI CACGAG 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 27, 200
BccI CCATC 1 cut(s) 892
BceAI ACGGC 2 cut(s) 38, 252
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 2 cut(s) 246, 449
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 3 cut(s) 95, 317, 800
BmgT120I GGNCC 4 cut(s) 62, 95, 317, 800
BmiI GGNNCC 4 cut(s) 64, 96, 223, 903
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 585, 874
BpmI CTGGAG 1 cut(s) 697
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 104, 292
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 2 cut(s) 300, 724
BsaJI CCNNGG 2 cut(s) 64, 927
BsaWI WCCGGW 2 cut(s) 154, 168
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bse1I ACTGG 4 cut(s) 223, 240, 398, 734
Bse3DI GCAATG 2 cut(s) 12, 528
BseAI TCCGGA 2 cut(s) 154, 168
BseDI CCNNGG 2 cut(s) 64, 927
BseGI GGATG 2 cut(s) 524, 576
BseMI GCAATG 2 cut(s) 12, 528
BseMII CTCAG 2 cut(s) 12, 472
BseNI ACTGG 4 cut(s) 223, 240, 398, 734
BseRI GAGGAG 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 833
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
BsiHKAI GWGCWC 2 cut(s) 27, 200
BsiSI CCGG 3 cut(s) 66, 155, 169
BslFI GGGAC 3 cut(s) 108, 129, 500
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 3 cut(s) 108, 129, 500
BsnI GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
Bsp1286I GDGCHC 2 cut(s) 27, 200
Bsp13I TCCGGA 2 cut(s) 154, 168
Bsp143I GATC 5 cut(s) 517, 699, 847, 901, 931
BspACI CCGC 1 cut(s) 131
BspANI GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
BspCNI CTCAG 2 cut(s) 13, 471
BspEI TCCGGA 2 cut(s) 154, 168
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 4 cut(s) 64, 96, 223, 903
BspPI GGATC 4 cut(s) 512, 896, 909, 939
BspQI GCTCTTC 1 cut(s) 205
BsrDI GCAATG 2 cut(s) 12, 528
BsrI ACTGG 4 cut(s) 223, 240, 398, 734
BssECI CCNNGG 2 cut(s) 64, 927
BssMI GATC 5 cut(s) 517, 699, 847, 901, 931
BssNI GRCGYC 2 cut(s) 300, 724
BssSI CACGAG 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 927
Bst2BI CACGAG 1 cut(s) 193
Bst4CI ACNGT 4 cut(s) 256, 317, 558, 808
Bst6I CTCTTC 3 cut(s) 205, 217, 773
BstACI GRCGYC 2 cut(s) 300, 724
BstC8I GCNNGC 2 cut(s) 44, 279
BstDEI CTNAG 3 cut(s) 21, 324, 458
BstF5I GGATG 2 cut(s) 524, 576
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 5 cut(s) 520, 702, 850, 904, 934
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 5 cut(s) 517, 699, 847, 901, 931
BstMWI GCNNNNNNNGC 2 cut(s) 48, 283
BstNSI RCATGY 1 cut(s) 864
BstSCI CCNGG 1 cut(s) 64
BstUI CGCG 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 901, 931
BstYI RGATCY 2 cut(s) 901, 931
BsuRI GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
BtgZI GCGATG 2 cut(s) 343, 897
BtsCI GGATG 2 cut(s) 524, 576
BtsIMutI CAGTG 3 cut(s) 18, 216, 405
Cac8I GCNNGC 2 cut(s) 44, 279
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 62, 95, 317, 800
Csp6I GTAC 1 cut(s) 731
CviAII CATG 2 cut(s) 823, 861
CviQI GTAC 1 cut(s) 731
DdeI CTNAG 3 cut(s) 21, 324, 458
DpnI GATC 5 cut(s) 519, 701, 849, 903, 933
DpnII GATC 5 cut(s) 517, 699, 847, 901, 931
DraIII CACNNNGTG 1 cut(s) 877
EaeI YGGCCR 2 cut(s) 15, 237
Eam1104I CTCTTC 3 cut(s) 205, 217, 773
EarI CTCTTC 3 cut(s) 205, 217, 773
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 927
Eco147I AGGCCT 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 3 cut(s) 95, 317, 800
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 3 cut(s) 186, 774, 850
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 393
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 927
FaeI CATG 2 cut(s) 826, 864
FaiI YATR 9 cut(s) 264, 366, 405, 491, 626, 720, 761, 824, 862
FalI AAGNNNNNCTT 2 cut(s) 770, 802
FaqI GGGAC 3 cut(s) 108, 129, 500
FatI CATG 2 cut(s) 822, 860
FblI GTMKAC 2 cut(s) 186, 615
FokI GGATG 2 cut(s) 511, 563
FriOI GRGCYC 1 cut(s) 27
FspBI CTAG 2 cut(s) 246, 449
GlaI GCGC 1 cut(s) 52
GsaI CCCAGC 1 cut(s) 837
GsuI CTGGAG 1 cut(s) 697
HaeIII GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
HapII CCGG 3 cut(s) 66, 155, 169
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 2 cut(s) 300, 724
Hin1II CATG 2 cut(s) 826, 864
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 4 cut(s) 117, 158, 499, 640
HpaII CCGG 3 cut(s) 66, 155, 169
HphI GGTGA 1 cut(s) 735
Hpy166II GTNNAC 5 cut(s) 187, 320, 616, 688, 844
Hpy188I TCNGA 4 cut(s) 91, 205, 355, 906
Hpy188III TCNNGA 6 cut(s) 121, 155, 169, 496, 637, 919
Hpy8I GTNNAC 5 cut(s) 187, 320, 616, 688, 844
Hpy99I CGWCG 3 cut(s) 302, 305, 617
HpyAV CCTTC 3 cut(s) 243, 531, 688
HpyCH4III ACNGT 4 cut(s) 256, 317, 558, 808
HpyCH4IV ACGT 3 cut(s) 177, 300, 724
HpyCH4V TGCA 3 cut(s) 533, 608, 826
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 283
HpyF3I CTNAG 3 cut(s) 21, 324, 458
HpySE526I ACGT 3 cut(s) 177, 300, 724
Hsp92I GRCGYC 2 cut(s) 300, 724
Hsp92II CATG 2 cut(s) 826, 864
HspAI GCGC 1 cut(s) 51
Kpn2I TCCGGA 2 cut(s) 154, 168
Kzo9I GATC 5 cut(s) 517, 699, 847, 901, 931
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 4 cut(s) 30, 227, 606, 678
LweI GCATC 2 cut(s) 585, 874
MaeI CTAG 2 cut(s) 246, 449
MaeII ACGT 3 cut(s) 177, 300, 724
MaeIII GTNAC 4 cut(s) 552, 558, 741, 856
MalI GATC 5 cut(s) 519, 701, 849, 903, 933
MboI GATC 5 cut(s) 517, 699, 847, 901, 931
MboII GAAGA 6 cut(s) 24, 192, 204, 395, 559, 790
MflI RGATCY 2 cut(s) 901, 931
MhlI GDGCHC 2 cut(s) 27, 200
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 4 cut(s) 150, 393, 471, 582
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 9 cut(s) 57, 85, 106, 129, 220, 235, 267, 477, 776
Mox20I TGGCCA 1 cut(s) 17
MroI TCCGGA 2 cut(s) 154, 168
MscI TGGCCA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 896
Msp20I TGGCCA 1 cut(s) 17
MspI CCGG 3 cut(s) 66, 155, 169
MspR9I CCNGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 48, 283
NciI CCSGG 1 cut(s) 66
NdeII GATC 5 cut(s) 517, 699, 847, 901, 931
NlaIII CATG 2 cut(s) 826, 864
NlaIV GGNNCC 4 cut(s) 64, 96, 223, 903
NmeAIII GCCGAG 2 cut(s) 39, 165
NmuCI GTSAC 2 cut(s) 558, 741
NspI RCATGY 1 cut(s) 864
PceI AGGCCT 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 721
PfeI GAWTC 3 cut(s) 158, 499, 640
PflFI GACNNNGTC 1 cut(s) 302
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 95
PsiI TTATAA 1 cut(s) 761
Psp124BI GAGCTC 1 cut(s) 27
Psp1406I AACGTT 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 833
PspN4I GGNNCC 4 cut(s) 64, 96, 223, 903
PspPI GGNCC 4 cut(s) 62, 95, 317, 800
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 2 cut(s) 901, 931
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 1 cut(s) 732
RsaNI GTAC 1 cut(s) 731
RseI CAYNNNNRTG 1 cut(s) 896
SacI GAGCTC 1 cut(s) 27
SalI GTCGAC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 205
Sau3AI GATC 5 cut(s) 517, 699, 847, 901, 931
Sau96I GGNCC 4 cut(s) 62, 95, 317, 800
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 2 cut(s) 27, 200
SfaNI GCATC 2 cut(s) 585, 874
SinI GGWCC 3 cut(s) 95, 317, 800
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 2 cut(s) 119, 271
SmoI CTYRAG 2 cut(s) 119, 271
Sse9I AATT 4 cut(s) 150, 393, 471, 582
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 671
SspMI CTAG 2 cut(s) 246, 449
SstI GAGCTC 1 cut(s) 27
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 4 cut(s) 256, 317, 558, 808
TaiI ACGT 3 cut(s) 180, 303, 727
TaqI TCGA 2 cut(s) 615, 918
TasI AATT 4 cut(s) 150, 393, 471, 582
TfiI GAWTC 3 cut(s) 158, 499, 640
TscAI CASTG 3 cut(s) 25, 223, 405
TseFI GTSAC 2 cut(s) 558, 741
Tsp45I GTSAC 2 cut(s) 558, 741
TspDTI ATGAA 6 cut(s) 396, 513, 648, 791, 807, 811
TspGWI ACGGA 2 cut(s) 593, 779
TspRI CASTG 3 cut(s) 25, 223, 405
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 3 cut(s) 95, 317, 800
XapI RAATTY 3 cut(s) 150, 393, 471
XceI RCATGY 1 cut(s) 864
XcmI CCANNNNNNNNNTGG 1 cut(s) 895
XmiI GTMKAC 2 cut(s) 186, 615
XspI CTAG 2 cut(s) 246, 449
ZraI GACGTC 2 cut(s) 301, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.