Rroxscaffold_2G00142580

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000224
Physical Location & Seq
Forward (+)
80703222 .. 80704190
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142580.1

Sequence Viewer

Length: 591 bp
ATGATTATTGCTACAACGATCGGTCTAAGTGATATTACAATGTCAACAAATATCCATGAGCCTCCTATAGGTCCAGAAAGAGAAGTGCGACGAAAGACAAGACGACTGAATTATGAGAATTTGCATACCCAGCTTAATGCTAAAGATACCCATCACTTTGTTCGGAACTTTGCACCTATGAATGTGGAAAAATGGAATGACATCGAATCGGCTGATGTGACTAAGACGATTGAACGAATAACTAGCAAGTTCGACATTAACATGTCTCTTCCTTGGGTTAAGAGATATATAAACAAGATGTGTATGACGGCATTCTTTAAATTCCGTTATAGCCTAAAGAAGTATTTTGAGAAATTCCCAATAGTGAATGAAGCACGAGAAAACAAGCCTAAAGCAGTTAAAACTCAAGCAGAATGGGATTTTCTGTGTGCTCGTTTTTCCAGTGAAGAATTACAGATCAACTCACAGGATGCTGAAAACAAGTTGCATTTGACATATCACCACAATGCTTGGTCGAAGTATTTCATATCCCATGAAGATGAGATTGTAAGATTTGAAGAACTGAAGGAGCATGCCAAAATATATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

196

Amino Acids

23.44

Weight (kDa)

8.74

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 118, 320, 353
AcuI CTGAAG 1 cut(s) 584
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 2 cut(s) 233, 557
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 270
ApoI RAATTY 3 cut(s) 118, 320, 353
Asp700I GAANNNNTTC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 491
AvaII GGWCC 1 cut(s) 71
BauI CACGAG 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 433
BccI CCATC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmsI GCATC 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 441
BseYI CCCAGC 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 2 cut(s) 18, 456
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 2 cut(s) 18, 456
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 26, 222
BstENI CCTNNNNNAGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 2 cut(s) 21, 459
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 18, 456
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNSI RCATGY 2 cut(s) 265, 575
BstSFI CTRYAG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 573
Cfr13I GGNCC 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 491, 526
CviAII CATG 4 cut(s) 56, 262, 533, 572
CviJI RGCY 5 cut(s) 61, 133, 212, 333, 388
CviKI_1 RGCY 5 cut(s) 61, 133, 212, 333, 388
DdeI CTNAG 2 cut(s) 26, 222
DpnI GATC 2 cut(s) 20, 458
DpnII GATC 2 cut(s) 18, 456
DraI TTTAAA 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 584
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 4 cut(s) 59, 265, 536, 575
FatI CATG 4 cut(s) 55, 261, 532, 571
FokI GGATG 1 cut(s) 482
FspBI CTAG 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 133
Hin1II CATG 4 cut(s) 59, 265, 536, 575
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 1 cut(s) 206
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 559
HpyCH4V TGCA 3 cut(s) 124, 173, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 26, 222
Hsp92II CATG 4 cut(s) 59, 265, 536, 575
Kzo9I GATC 2 cut(s) 18, 456
LmnI GCTCC 1 cut(s) 568
LpnPI CCDG 4 cut(s) 87, 143, 452, 454
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 20, 458
MboI GATC 2 cut(s) 18, 456
MboII GAAGA 4 cut(s) 260, 458, 548, 569
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 5 cut(s) 109, 118, 320, 353, 449
MnlI CCTC 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 521
MseI TTAA 5 cut(s) 135, 258, 279, 318, 399
MslI CAYNNNNRTG 3 cut(s) 260, 504, 537
Mva1269I GAATGC 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 2 cut(s) 18, 456
NlaIII CATG 4 cut(s) 59, 265, 536, 575
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 2 cut(s) 265, 575
PaeI GCATGC 1 cut(s) 575
PciI ACATGT 1 cut(s) 261
PctI GAATGC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 206
Ple19I CGATCG 1 cut(s) 21
PscI ACATGT 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 71
PvuI CGATCG 1 cut(s) 21
RseI CAYNNNNRTG 3 cut(s) 260, 504, 537
SaqAI TTAA 5 cut(s) 135, 258, 279, 318, 399
Sau3AI GATC 2 cut(s) 18, 456
Sau96I GGNCC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 433
SetI ASST 3 cut(s) 73, 135, 178
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 3 cut(s) 260, 504, 537
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SphI GCATGC 1 cut(s) 575
Sse9I AATT 5 cut(s) 109, 118, 320, 353, 449
SspMI CTAG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 272
TaqI TCGA 3 cut(s) 204, 252, 515
TaqII GACCGA 1 cut(s) 11
TasI AATT 5 cut(s) 109, 118, 320, 353, 449
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 5 cut(s) 135, 258, 279, 318, 399
Tru9I TTAA 5 cut(s) 135, 258, 279, 318, 399
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 194, 384, 514, 549
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 3 cut(s) 118, 320, 353
XceI RCATGY 2 cut(s) 265, 575
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.