Rorug05G0359700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000224
Physical Location & Seq
Forward (+)
45751117 .. 45751674
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0359700.1

Sequence Viewer

Length: 558 bp
ATGGAGGAGTTATTCTTTTGGGTTTGCATCACTAATATGCCGCCGACATATGAACAAAGGAATACTATTGCAAACGTTGCTACTATTGCAGGTAAATTCATTGAACTGGACCAAAAGCTTTTTGATGCAACTGGAGAGATTAGGGTTAGGGTTTCACATGCAATTTCGAAACCTTTTTTCATGCAAAAAACCCTAAAGTTTGCTAAAGGGACTGAGCAAGAGGTTCACTTTTTCTTTAAGAACCTCGTGGGAAAATGCAAGACATGTCTGCGTGTGTATCATGAGGGAGAAGCATGCAGTGGTGAAACTGCAACTCCACCAGTCATTACTACTCCAGCACCGGCGGCAAGAAAGCTGGAGCTCAATGGCTCATTGTTAGGGTTTTCGGGAAATCAATTCAAGGATGGACTGTTTCACTCCAAGGTCTCACTACCCCTATTCTTCAGCCAGTTGGAAGGTCTCTGTTTGGAGGAACAGAGACAAATAAGGTACGCAAACTTATTGTTATTCGTAGTGCAGAAAAAAGATAGGTTACTGAAGGCAATGAGTTGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.03

Weight (kDa)

8.98

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AciI CCGC 2 cut(s) 41, 344
AclI AACGTT 1 cut(s) 75
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 2 cut(s) 427, 557
AfaI GTAC 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 104, 400
AluBI AGCT 3 cut(s) 118, 355, 361
AluI AGCT 3 cut(s) 118, 355, 361
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 3 cut(s) 430, 464, 472
ApoI RAATTY 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 363
BauI CACGAG 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 363
BccI CCATC 1 cut(s) 398
BcoDI GTCTC 3 cut(s) 430, 464, 472
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 2 cut(s) 41, 345
BlsI GCNGC 2 cut(s) 42, 346
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmsI GCATC 2 cut(s) 36, 115
BpmI CTGGAG 3 cut(s) 153, 318, 377
Bpu14I TTCGAA 1 cut(s) 167
BsaI GGTCTC 2 cut(s) 430, 464
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 4 cut(s) 111, 136, 320, 448
Bse3DI GCAATG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 409
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 4 cut(s) 111, 136, 320, 448
BseRI GAGGAG 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 536
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 223
BsmAI GTCTC 3 cut(s) 430, 464, 472
BsmFI GGGAC 1 cut(s) 223
Bso31I GGTCTC 2 cut(s) 430, 464
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 363
BspACI CCGC 2 cut(s) 41, 344
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 430, 464
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 4 cut(s) 111, 136, 320, 448
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 420
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 409
BstMAI GTCTC 3 cut(s) 430, 464, 472
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 344
BstNSI RCATGY 3 cut(s) 161, 267, 297
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 490
CviAII CATG 5 cut(s) 158, 181, 264, 281, 294
CviJI RGCY 6 cut(s) 118, 355, 361, 369, 447, 553
CviKI_1 RGCY 6 cut(s) 118, 355, 361, 369, 447, 553
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 2 cut(s) 430, 464
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 427, 557
EcoICRI GAGCTC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 5 cut(s) 161, 184, 267, 284, 297
FaiI YATR 8 cut(s) 38, 49, 51, 159, 182, 265, 282, 295
FaqI GGGAC 1 cut(s) 223
FatI CATG 5 cut(s) 157, 180, 263, 280, 293
FauNDI CATATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 41, 345
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 2 cut(s) 41, 345
GluI GCNGC 2 cut(s) 41, 345
GsuI CTGGAG 3 cut(s) 153, 318, 377
HapII CCGG 1 cut(s) 341
Hin1II CATG 5 cut(s) 161, 184, 267, 284, 297
HindIII AAGCTT 1 cut(s) 116
HpaII CCGG 1 cut(s) 341
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 281, 387
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 449, 532
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 344
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 5 cut(s) 161, 184, 267, 284, 297
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 8 cut(s) 75, 92, 117, 333, 341, 348, 354, 461
LweI GCATC 2 cut(s) 36, 115
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 531
MboII GAAGA 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 95, 162, 395
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 4 cut(s) 214, 254, 277, 463
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 344
NdeI CATATG 1 cut(s) 49
NlaIII CATG 5 cut(s) 161, 184, 267, 284, 297
NspI RCATGY 3 cut(s) 161, 267, 297
NspV TTCGAA 1 cut(s) 167
PaeI GCATGC 1 cut(s) 297
PagI TCATGA 1 cut(s) 280
PciI ACATGT 1 cut(s) 263
PkrI GCNGC 2 cut(s) 42, 346
PscI ACATGT 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 363
Psp1406I AACGTT 1 cut(s) 75
PspPI GGNCC 1 cut(s) 109
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 41, 345
Sau96I GGNCC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 2 cut(s) 36, 115
SfuI TTCGAA 1 cut(s) 167
SgrAI CRCCGGYG 1 cut(s) 340
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 35
SphI GCATGC 1 cut(s) 297
Sse9I AATT 3 cut(s) 95, 162, 395
SsiI CCGC 2 cut(s) 41, 344
SstI GAGCTC 1 cut(s) 363
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 167
TasI AATT 3 cut(s) 95, 162, 395
TauI GCSGC 2 cut(s) 43, 347
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 66, 88, 169
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 95
XceI RCATGY 3 cut(s) 161, 267, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.