RLG00000018887

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000224
Physical Location & Seq
Forward (+)
42035069 .. 42051549
16481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018887

Sequence Viewer

Length: 819 bp
ATGACAAATTGTAGTGGTAATGCACCGAGTAAACGCTCTCGTGTGCAAACTACTGATCAGCCATGCCCAAATGGATCCCGTTCTACTTCAGGTAATGCAATGAGTAAACGCTCTCGTGTGCAAACTACTAATCAGTCATGCAAAAATTATGTAGAAGATGAACTCAATTCTGCTATTGGTACCACTACAGAACGAACTACTACTGGGGTCAGAATTAGTTCACGTCTTCAGCATCAAACTGCTAATGATCAGCTATTGATAAATGTTACAACTGAAGAGCAAACTGATAATGTGATGTCAGCCAGTAATCAAGACCCTCCTACAGGTCCAACAAAAAAGGTGCGGGGAAAGACAAGAGTAGTGAATGCAGATAAGGCAGCACAGACTGGAGAGATGCAAGGTGCAATTGATCGCTTTGAAACAGAGTACAAAAGCACTAAAAAAGGTTGGGACTTGGGAGCAAAAGCAAAGTGGGATGAAATGGTTAAGATGCGAACTGAGACAACTCAACCTGATGGAACTCGGACAATGACAGATGATGAAATTTGTGCAAAAGTCCTCGGAGTCAAATCAGGCTACATCAAGGGTTGTAGTTTTGGCCCTAGACCTCCACCATCAAGGGTCTCTCATTCCTCGATAAATGAAATGTCTGAAAAGAACAAAGAGTTGCAAGAACAGCTTCAAGAGACCCAACACCTTGTAGGGACTCAACAACAAAAGATTGATGCACAAAATGAGGTGATCCAAAGATTGGAGGAGCAAGCCAAAAAGTTTGAGGAGTTCATGGCTAACTTTTCCAGGCAACATCCATCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.24

Weight (kDa)

8.74

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 751
AciI CCGC 1 cut(s) 343
AclWI GGATC 3 cut(s) 69, 82, 736
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 3 cut(s) 72, 212, 294
AfaI GTAC 2 cut(s) 181, 428
AfiI CCNNNNNNNGG 2 cut(s) 323, 751
AgsI TTSAA 2 cut(s) 419, 683
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 1 cut(s) 797
AluBI AGCT 2 cut(s) 253, 679
AluI AGCT 2 cut(s) 253, 679
Alw26I GTCTC 3 cut(s) 494, 628, 680
AlwI GGATC 3 cut(s) 69, 82, 736
AoxI GGCC 1 cut(s) 598
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 2 cut(s) 217, 678
Asp718I GGTACC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 326, 599
AsuHPI GGTGA 1 cut(s) 751
AvaII GGWCC 1 cut(s) 326
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 179
BauI CACGAG 2 cut(s) 39, 114
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 389
BccI CCATC 3 cut(s) 509, 622, 817
BciT130I CCWGG 1 cut(s) 799
BclI TGATCA 2 cut(s) 55, 247
BcoDI GTCTC 3 cut(s) 494, 628, 680
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 2 cut(s) 186, 321
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 799
Bme18I GGWCC 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 326, 599
BmiI GGNNCC 2 cut(s) 76, 181
BmrFI CCNGG 1 cut(s) 799
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 4 cut(s) 241, 384, 480, 715
BmuI ACTGGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 408
BsaI GGTCTC 2 cut(s) 628, 680
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 751
Bse1I ACTGG 3 cut(s) 208, 303, 391
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 2 cut(s) 481, 805
BseLI CCNNNNNNNGG 2 cut(s) 323, 751
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 3 cut(s) 208, 303, 391
BseRI GAGGAG 2 cut(s) 770, 791
BseXI GCAGC 1 cut(s) 389
BshFI GGCC 1 cut(s) 600
BshNI GGYRCC 1 cut(s) 179
BslFI GGGAC 2 cut(s) 464, 718
BslI CCNNNNNNNGG 2 cut(s) 323, 751
BsmAI GTCTC 3 cut(s) 494, 628, 680
BsmFI GGGAC 2 cut(s) 464, 718
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 600
Bso31I GGTCTC 2 cut(s) 628, 680
Bsp143I GATC 5 cut(s) 55, 74, 247, 409, 741
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 600
BspCNI CTCAG 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 76, 181
BspPI GGATC 3 cut(s) 69, 82, 736
BspQI GCTCTTC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 2 cut(s) 628, 680
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 3 cut(s) 208, 303, 391
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 5 cut(s) 55, 74, 247, 409, 741
BssSI CACGAG 2 cut(s) 39, 114
Bst2BI CACGAG 2 cut(s) 39, 114
Bst2UI CCWGG 1 cut(s) 799
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 762
BstDEI CTNAG 1 cut(s) 498
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 481, 805
BstKTI GATC 5 cut(s) 58, 77, 250, 412, 744
BstMAI GTCTC 3 cut(s) 494, 628, 680
BstMBI GATC 5 cut(s) 55, 74, 247, 409, 741
BstMWI GCNNNNNNNGC 2 cut(s) 374, 676
BstNI CCWGG 1 cut(s) 799
BstSCI CCNGG 1 cut(s) 797
BstSFI CTRYAG 2 cut(s) 186, 321
BstV1I GCAGC 1 cut(s) 389
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 1 cut(s) 600
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 481, 805
Cac8I GCNNGC 1 cut(s) 762
Cfr13I GGNCC 2 cut(s) 326, 599
Csp6I GTAC 2 cut(s) 180, 427
CviAII CATG 3 cut(s) 63, 138, 784
CviJI RGCY 8 cut(s) 61, 253, 302, 576, 600, 679, 764, 788
CviKI_1 RGCY 8 cut(s) 61, 253, 302, 576, 600, 679, 764, 788
CviQI GTAC 2 cut(s) 180, 427
DdeI CTNAG 1 cut(s) 498
DpnI GATC 5 cut(s) 57, 76, 249, 411, 743
DpnII GATC 5 cut(s) 55, 74, 247, 409, 741
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco31I GGTCTC 2 cut(s) 628, 680
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 3 cut(s) 72, 212, 294
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 797
FaeI CATG 3 cut(s) 66, 141, 787
FaiI YATR 4 cut(s) 64, 139, 150, 785
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 2 cut(s) 464, 718
FatI CATG 3 cut(s) 62, 137, 783
FauI CCCGC 1 cut(s) 336
FbaI TGATCA 2 cut(s) 55, 247
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 488, 792
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 603
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 1 cut(s) 600
Hin1II CATG 3 cut(s) 66, 141, 787
HinfI GANTC 2 cut(s) 564, 706
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 3 cut(s) 32, 107, 221
Hpy188I TCNGA 4 cut(s) 212, 525, 563, 652
Hpy188III TCNNGA 2 cut(s) 311, 683
Hpy8I GTNNAC 3 cut(s) 32, 107, 221
HpyCH4IV ACGT 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 676
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 3 cut(s) 66, 141, 787
KpnI GGTACC 1 cut(s) 183
Ksp22I TGATCA 2 cut(s) 55, 247
Kzo9I GATC 5 cut(s) 55, 74, 247, 409, 741
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 2 cut(s) 458, 757
LpnPI CCDG 9 cut(s) 75, 189, 309, 316, 372, 525, 558, 784, 811
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 4 cut(s) 241, 384, 480, 715
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 265
MalI GATC 5 cut(s) 57, 76, 249, 411, 743
MboI GATC 5 cut(s) 55, 74, 247, 409, 741
MboII GAAGA 3 cut(s) 167, 218, 287
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 1 cut(s) 74
MluCI AATT 6 cut(s) 7, 145, 166, 213, 405, 543
MlyI GAGTC 2 cut(s) 573, 700
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 7 cut(s) 327, 569, 618, 643, 730, 748, 769
MroXI GAANNNNTTC 2 cut(s) 217, 678
MseI TTAA 1 cut(s) 486
MspR9I CCNGG 1 cut(s) 799
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 799
MwoI GCNNNNNNNGC 2 cut(s) 374, 676
NdeII GATC 5 cut(s) 55, 74, 247, 409, 741
NlaIII CATG 3 cut(s) 66, 141, 787
NlaIV GGNNCC 2 cut(s) 76, 181
PciSI GCTCTTC 1 cut(s) 270
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 2 cut(s) 217, 678
PflMI CCANNNNNTGG 1 cut(s) 751
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 2 cut(s) 572, 700
PpsI GAGTC 2 cut(s) 572, 700
Psp6I CCWGG 1 cut(s) 797
PspGI CCWGG 1 cut(s) 797
PspN4I GGNNCC 2 cut(s) 76, 181
PspPI GGNCC 2 cut(s) 326, 599
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 2 cut(s) 181, 428
RsaNI GTAC 2 cut(s) 180, 427
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 5 cut(s) 55, 74, 247, 409, 741
Sau96I GGNCC 2 cut(s) 326, 599
SchI GAGTC 2 cut(s) 573, 700
ScrFI CCNGG 1 cut(s) 799
SfaNI GCATC 4 cut(s) 241, 384, 480, 715
SfcI CTRYAG 2 cut(s) 186, 321
SinI GGWCC 1 cut(s) 326
Sse9I AATT 6 cut(s) 7, 145, 166, 213, 405, 543
SsiI CCGC 1 cut(s) 343
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 797
TaiI ACGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 635
TasI AATT 6 cut(s) 7, 145, 166, 213, 405, 543
TatI WGTACW 1 cut(s) 426
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 5 cut(s) 174, 492, 555, 657, 772
Van91I CCANNNNNTGG 1 cut(s) 751
VpaK11BI GGWCC 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 321
XapI RAATTY 1 cut(s) 543
XmnI GAANNNNTTC 2 cut(s) 217, 678
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.