Rh4BG202100

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000224
Physical Location & Seq
Reverse (-)
34644900 .. 34648530
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG202100.1

Sequence Viewer

Length: 1005 bp
ATGTTCAAATTTTTAATTAGCTCGAAATTTGATTTGGATATCCAATGTAGTTGTAGTTTTGGCTCTTCTTGTAAGTCTTGCAAGTTAAACTTATTTTATTTCTCTTATAGTAACAGTGACAAAATGTCGAAACGTCTTCGTTCGAACGTTTCTGGTGCCCAAAAGGCTAATGTTGGTGTCACTTTGACAAAACGGCGACGTGTACAAGCAAACGAACCTTCACTTCCAAATTCTTTGCAAGATGAACTTGATGTTCCTGATATGCCTACCTCTAATAGAACTACCCAAAGGGCTATTGCTAGTACCATTATCCAAAGGCCTACTGTTGGTGACTCAATGAATGCACACGTTCAGTGCCAAACTACTAACCGGCCATCAATAAATGCTACAACTGAAGGGTTGAATGATGCTAGGACATCAGTCGATATCCAAGGATCTACTACAGAAGGTCCAGAAAAAAAAGTGCGTGGAAAGACAAGAGGTTTAAATGCTGATAAGGTGCATGAGCAGCTTGGTACTAAAATACCTGTGACTTTCAAGAAAGAAAATGGCAGACCCACAGGTCCATATGCAGAAATGTTTGCTAATGAAATTGGATTCACCATTCGGAATCATGCACCTCTAAATGTGAAAAAATGGAAGGAAGTAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACTACTAAGTACGATATTGACATGTCTCTACCTTGGGTTAAGAGATATGTGAATAAATCTTTTGGAACAGTGTTTGCTAACTTCCGTTATAAGCTGAAGAAGCATTTTGAGCAATTCTCAACAAAAGAGGAAGCATTAGAAAATAAACACAAAGATGTTAAAACTGAAGAAGAATGGGCTTTTTTGTGCACTTATTTTTCTAGTGAAGATTTTCAGGTACGTACAAGATTGTTTGTTTATTCTTTTTATTTTTGCTATAGTTGCTTTTCAAATACTACACTAATTTTGTTAATAATTTCTACATTTCAGTTTGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

334

Amino Acids

38.25

Weight (kDa)

9.46

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AasI GACNNNNNNGTC 1 cut(s) 561
AccB1I GGYRCC 1 cut(s) 155
AclI AACGTT 1 cut(s) 147
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 3 cut(s) 8, 26, 229
AcuI CTGAAG 3 cut(s) 414, 800, 870
AfaI GTAC 6 cut(s) 204, 304, 517, 695, 903, 907
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 3 cut(s) 199, 346, 705
AgsI TTSAA 4 cut(s) 7, 403, 538, 954
AhdI GACNNNNNGTC 1 cut(s) 124
AjiI CACGTC 1 cut(s) 200
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 3 cut(s) 21, 511, 778
AluI AGCT 3 cut(s) 21, 511, 778
Alw21I GWGCWC 1 cut(s) 875
Alw26I GTCTC 1 cut(s) 714
Alw44I GTGCAC 1 cut(s) 871
AlwI GGATC 1 cut(s) 442
AoxI GGCC 2 cut(s) 317, 371
ApaLI GTGCAC 1 cut(s) 871
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 3 cut(s) 8, 26, 229
Asp700I GAANNNNTTC 1 cut(s) 894
AspS9I GGNCC 2 cut(s) 449, 563
AsuHPI GGTGA 2 cut(s) 341, 592
AsuII TTCGAA 1 cut(s) 143
AvaII GGWCC 2 cut(s) 449, 563
BaeGI GKGCMC 2 cut(s) 160, 875
BanI GGYRCC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 875
BbvI GCAGC 1 cut(s) 520
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 209
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 3 cut(s) 300, 411, 885
BfmI CTRYAG 2 cut(s) 441, 940
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
Bme18I GGWCC 2 cut(s) 449, 563
BmeRI GACNNNNNGTC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 449, 563
BmiI GGNNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 397
BoxI GACNNNNGTC 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 785, 817
Bpu14I TTCGAA 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 905
BsaJI CCNNGG 2 cut(s) 430, 716
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse118I RCCGGY 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 430, 716
BseLI CCNNNNNNNGG 1 cut(s) 326
BseSI GKGCMC 2 cut(s) 160, 875
BseXI GCAGC 1 cut(s) 520
BshFI GGCC 2 cut(s) 319, 373
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 875
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 2 cut(s) 319, 373
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 160, 875
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 434, 672
BspANI GGCC 2 cut(s) 319, 373
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 1 cut(s) 442
BspQI GCTCTTC 1 cut(s) 70
BspT104I TTCGAA 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 369
BsrGI TGTACA 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 430, 716
BssMI GATC 2 cut(s) 434, 672
BssT1I CCWWGG 2 cut(s) 430, 716
Bst4CI ACNGT 3 cut(s) 116, 325, 754
Bst6I CTCTTC 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 905
BstBI TTCGAA 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 690
BstKTI GATC 2 cut(s) 437, 675
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 2 cut(s) 434, 672
BstMWI GCNNNNNNNGC 5 cut(s) 164, 508, 784, 793, 945
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 419
BstSFI CTRYAG 2 cut(s) 441, 940
BstSLI GKGCMC 2 cut(s) 160, 875
BstSNI TACGTA 1 cut(s) 905
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 2 cut(s) 319, 373
BtrI CACGTC 1 cut(s) 200
BtsIMutI CAGTG 3 cut(s) 121, 359, 759
Cfr10I RCCGGY 1 cut(s) 369
Cfr13I GGNCC 2 cut(s) 449, 563
Csp6I GTAC 6 cut(s) 203, 303, 516, 694, 902, 906
CviAII CATG 3 cut(s) 503, 614, 706
CviJI RGCY 9 cut(s) 21, 63, 167, 293, 319, 373, 511, 778, 863
CviKI_1 RGCY 9 cut(s) 21, 63, 167, 293, 319, 373, 511, 778, 863
CviQI GTAC 6 cut(s) 203, 303, 516, 694, 902, 906
DdeI CTNAG 1 cut(s) 690
DpnI GATC 2 cut(s) 436, 674
DpnII GATC 2 cut(s) 434, 672
DraI TTTAAA 1 cut(s) 486
DrdI GACNNNNNNGTC 1 cut(s) 561
DriI GACNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 561
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 70
Eco105I TACGTA 1 cut(s) 905
Eco130I CCWWGG 2 cut(s) 430, 716
Eco147I AGGCCT 1 cut(s) 319
Eco32I GATATC 2 cut(s) 40, 427
Eco47I GGWCC 2 cut(s) 449, 563
Eco57I CTGAAG 3 cut(s) 414, 800, 870
EcoRV GATATC 2 cut(s) 40, 427
EcoT14I CCWWGG 2 cut(s) 430, 716
ErhI CCWWGG 2 cut(s) 430, 716
FaeI CATG 3 cut(s) 506, 617, 709
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 231, 263
FatI CATG 3 cut(s) 502, 613, 705
FauNDI CATATG 1 cut(s) 568
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 1 cut(s) 509
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 3 cut(s) 300, 411, 885
GluI GCNGC 1 cut(s) 509
HaeIII GGCC 2 cut(s) 319, 373
HapII CCGG 1 cut(s) 370
Hin1II CATG 3 cut(s) 506, 617, 709
HinfI GANTC 3 cut(s) 332, 597, 610
HpaII CCGG 1 cut(s) 370
HphI GGTGA 2 cut(s) 341, 592
Hpy166II GTNNAC 2 cut(s) 203, 873
Hpy188I TCNGA 1 cut(s) 609
Hpy188III TCNNGA 3 cut(s) 257, 452, 538
Hpy8I GTNNAC 2 cut(s) 203, 873
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 4 cut(s) 228, 389, 440, 634
HpyCH4III ACNGT 3 cut(s) 116, 325, 754
HpyCH4IV ACGT 5 cut(s) 133, 147, 199, 348, 904
HpyCH4V TGCA 7 cut(s) 81, 238, 344, 502, 572, 617, 873
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 508, 784, 793, 945
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 5 cut(s) 133, 147, 199, 348, 904
Hsp92II CATG 3 cut(s) 506, 617, 709
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 2 cut(s) 434, 672
LguI GCTCTTC 1 cut(s) 70
LpnPI CCDG 8 cut(s) 138, 270, 383, 465, 540, 546, 666, 884
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 1 cut(s) 397
MaeI CTAG 3 cut(s) 300, 411, 885
MaeII ACGT 5 cut(s) 133, 147, 199, 348, 904
MaeIII GTNAC 5 cut(s) 110, 116, 178, 329, 529
MalI GATC 2 cut(s) 436, 674
MboI GATC 2 cut(s) 434, 672
MboII GAAGA 7 cut(s) 57, 128, 668, 793, 863, 866, 902
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 160, 875
MluCI AATT 8 cut(s) 8, 15, 26, 229, 591, 797, 966, 978
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 4 cut(s) 280, 473, 630, 805
MroXI GAANNNNTTC 1 cut(s) 894
MseI TTAA 7 cut(s) 14, 86, 485, 723, 843, 974, 1003
MslI CAYNNNNRTG 1 cut(s) 837
MspI CCGG 1 cut(s) 370
Mva1269I GAATGC 1 cut(s) 346
MwoI GCNNNNNNNGC 5 cut(s) 164, 508, 784, 793, 945
NdeI CATATG 1 cut(s) 568
NdeII GATC 2 cut(s) 434, 672
NlaIII CATG 3 cut(s) 506, 617, 709
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 4 cut(s) 116, 178, 329, 529
NspI RCATGY 1 cut(s) 709
NspV TTCGAA 1 cut(s) 143
PceI AGGCCT 1 cut(s) 319
PciI ACATGT 1 cut(s) 705
PciSI GCTCTTC 1 cut(s) 70
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 2 cut(s) 597, 610
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Ppu21I YACGTR 1 cut(s) 905
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 419
PsiI TTATAA 1 cut(s) 774
Psp1406I AACGTT 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 449, 563
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 6 cut(s) 204, 304, 517, 695, 903, 907
RsaNI GTAC 6 cut(s) 203, 303, 516, 694, 902, 906
RseI CAYNNNNRTG 1 cut(s) 837
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 7 cut(s) 14, 86, 485, 723, 843, 974, 1003
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 2 cut(s) 434, 672
Sau96I GGNCC 2 cut(s) 449, 563
SchI GAGTC 1 cut(s) 326
SduI GDGCHC 2 cut(s) 160, 875
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 2 cut(s) 441, 940
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 2 cut(s) 449, 563
SmiMI CAYNNNNRTG 1 cut(s) 837
SnaBI TACGTA 1 cut(s) 905
Sse9I AATT 8 cut(s) 8, 15, 26, 229, 591, 797, 966, 978
SseBI AGGCCT 1 cut(s) 319
SspMI CTAG 3 cut(s) 300, 411, 885
StuI AGGCCT 1 cut(s) 319
StyI CCWWGG 2 cut(s) 430, 716
TaaI ACNGT 3 cut(s) 116, 325, 754
TaiI ACGT 5 cut(s) 136, 150, 202, 351, 907
TaqI TCGA 4 cut(s) 23, 128, 143, 423
TasI AATT 8 cut(s) 8, 15, 26, 229, 591, 797, 966, 978
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 2 cut(s) 597, 610
Tru1I TTAA 7 cut(s) 14, 86, 485, 723, 843, 974, 1003
Tru9I TTAA 7 cut(s) 14, 86, 485, 723, 843, 974, 1003
TscAI CASTG 3 cut(s) 121, 359, 759
TseFI GTSAC 4 cut(s) 116, 178, 329, 529
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 4 cut(s) 116, 178, 329, 529
TspDTI ATGAA 3 cut(s) 258, 353, 603
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 3 cut(s) 121, 359, 759
VneI GTGCAC 1 cut(s) 871
VpaK11BI GGWCC 2 cut(s) 449, 563
XapI RAATTY 3 cut(s) 8, 26, 229
XceI RCATGY 1 cut(s) 709
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 3 cut(s) 300, 411, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.