RLG00000009090

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000224
Physical Location & Seq
Reverse (-)
46375785 .. 46378498
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009090

Sequence Viewer

Length: 489 bp
ATGGAGGTGTTGCCACTCCTTAAAGTTACTGTCTACAAAAAAGTGCCTTGCAAGTATCGAAAGAACAAGTTTGACATTGACATGTCTCTCCCTTGGGTCGCGAGATATATTCCAATTAACTGTTTGATATTTCATAATAATTTTCATATTCGTGAGAAGAATGCTATAAATAGGTCAAAGTTGACACATCACCACAAAGCCGGGTCAAAGTCATTTATGTCCCACCAAGAGCAAATTGCAGCACAGACTGGAGAGATGAAAGGTGCAATTGATCGCTTTGAAACAGAGTACAAAAGCACTAAAAAAGGTTGGGACATGGGAGCAAAAGATGAAATGATTAAGATGCGAATTGAGACAACTCAACTTGGTGGAACTCAGACAATGATAGATGATAAAATTTGTGCAAAAGTACATAGAGTCAAATTAGGCTACATCAAGGGTGGTGGTTTTGGACCTAGACCTCCACCATCAAGGTCTCTCATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

163

Amino Acids

18.63

Weight (kDa)

9.91

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000224)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08145 FvH4_4g05492 FvH4_4g15892
pyrus_communis pycom07g09690 pycom16g18380
rosa_chinensis RchiOBHm_Chr0c17g0499961 RchiOBHm_Chr1g0345631 RchiOBHm_Chr1g0345641 RchiOBHm_Chr1g0381191 RchiOBHm_Chr2g0102381 RchiOBHm_Chr2g0106131 RchiOBHm_Chr2g0148461 RchiOBHm_Chr2g0148471 RchiOBHm_Chr2g0157121 RchiOBHm_Chr3g0476041 RchiOBHm_Chr3g0476051 RchiOBHm_Chr3g0486961 RchiOBHm_Chr3g0487551 RchiOBHm_Chr4g0385011 RchiOBHm_Chr4g0410891 RchiOBHm_Chr4g0415291 RchiOBHm_Chr4g0427801 RchiOBHm_Chr4g0427811 RchiOBHm_Chr5g0001961 RchiOBHm_Chr5g0009841 RchiOBHm_Chr5g0025231 RchiOBHm_Chr6g0272461 RchiOBHm_Chr7g0199391 RchiOBHm_Chr7g0214031
rosa_laevigata RLG00000000706 RLG00000000749 RLG00000000750 RLG00000001166 RLG00000001748 RLG00000008952 RLG00000009088 RLG00000009090 RLG00000009094 RLG00000015391 RLG00000016519 RLG00000016520 RLG00000017174 RLG00000018887 RLG00000023058 RLG00000023059 RLG00000028282 RLG00000028531 RLG00000030444 RLG00000034592 RLG00000036555
rosa_multiflora Rmu_sc0000045.1_g000015 Rmu_sc0000157.1_g000011 Rmu_sc0000493.1_g000080 Rmu_sc0001307.1_g000027 Rmu_sc0001470.1_g000010 Rmu_sc0002277.1_g000022 Rmu_sc0002365.1_g000027 Rmu_sc0002693.1_g000008 Rmu_sc0002833.1_g000051 Rmu_sc0003275.1_g000066 Rmu_sc0003286.1_g000008 Rmu_sc0004234.1_g000035 Rmu_sc0004546.1_g000001 Rmu_sc0005058.1_g000004 Rmu_sc0007025.1_g000015 Rmu_sc0008144.1_g000006 Rmu_sc0008688.1_g000001 Rmu_sc0009185.1_g000010 Rmu_sc0020638.1_g000001
rosa_roxburghii Rroxscaffold_158G00443750 Rroxscaffold_1G00001770 Rroxscaffold_1G00002620 Rroxscaffold_1G00024490 Rroxscaffold_1G00035180 Rroxscaffold_1G00035190 Rroxscaffold_1G00061370 Rroxscaffold_1G00075590 Rroxscaffold_2G00110960 Rroxscaffold_2G00121340 Rroxscaffold_2G00128850 Rroxscaffold_2G00142580 Rroxscaffold_2G00142590 Rroxscaffold_3G00223630 Rroxscaffold_3G00263220 Rroxscaffold_4G00310820 Rroxscaffold_5G00336270 Rroxscaffold_5G00336280 Rroxscaffold_5G00336320 Rroxscaffold_5G00349820 Rroxscaffold_6G00395720 Rroxscaffold_6G00395910 Rroxscaffold_6G00415660 Rroxscaffold_7G00179770 Rroxscaffold_7G00184390 Rroxscaffold_7G00189270 Rroxscaffold_7G00197240 Rroxscaffold_8G00436850 Rroxscaffold_8G00436860 Rroxscaffold_8G00436880
rosa_rugosa Rorug01G0118400 Rorug02G0048900 Rorug02G0185600 Rorug02G0222600 Rorug03G0152800 Rorug04G0047600 Rorug04G0446400 Rorug05G0118900 Rorug05G0359700 Rorug05G0374800 Rorug05G0374900 Rorug05G0375000 Rorug05G0375100 Rorug05G0418900 Rorug05G0540000 Rorug05G0540000 Rorug05G0540100 Rorug06G0358700 Rorug06G0358700 Rorug06G0408700 Rorug06G0408700 Rorug06G0408800 Rorug06G0408900 Rorug07G0203000
rosa_samantha Rh1CG190700 Rh1CG196300 Rh2BG566600 Rh2CG188900 Rh3AG090900 Rh3AG278200 Rh3BG233900 Rh3CG094300 Rh4BG202100 Rh5BG543100 Rh5CG566000 Rh5DG397500 Rh7CG432800
rosa_wichuraiana Rw0G017850 Rw1G010340 Rw1G016290 Rw2G018520 Rw3G008970 Rw5G028090 Rw5G043930 Rw6G014660 Rw6G030340 Rw7G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 101
AcsI RAATTY 1 cut(s) 396
AfaI GTAC 2 cut(s) 290, 411
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 1 cut(s) 281
Alw26I GTCTC 3 cut(s) 90, 347, 480
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 452
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 475
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 3 cut(s) 90, 347, 480
BfaI CTAG 1 cut(s) 456
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 2 cut(s) 205, 326
BsmAI GTCTC 3 cut(s) 90, 347, 480
BsmFI GGGAC 2 cut(s) 205, 326
BsmI GAATGC 1 cut(s) 166
Bso31I GGTCTC 1 cut(s) 480
Bsp143I GATC 1 cut(s) 271
Bsp68I TCGCGA 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 480
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 31, 122
BstDEI CTNAG 1 cut(s) 375
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 3 cut(s) 90, 347, 480
BstMBI GATC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 200
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 251
BtuMI TCGCGA 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 289, 410
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 2 cut(s) 82, 316
CviJI RGCY 2 cut(s) 200, 429
CviKI_1 RGCY 2 cut(s) 200, 429
CviQI GTAC 2 cut(s) 289, 410
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 2 cut(s) 85, 319
FaiI YATR 8 cut(s) 83, 108, 135, 147, 167, 218, 317, 414
FaqI GGGAC 2 cut(s) 205, 326
FatI CATG 2 cut(s) 81, 315
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 456
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 270
HapII CCGG 1 cut(s) 201
Hin1II CATG 2 cut(s) 85, 319
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 1 cut(s) 417
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 34, 183
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 2 cut(s) 100, 152
Hpy8I GTNNAC 2 cut(s) 34, 183
HpyCH4III ACNGT 2 cut(s) 31, 122
HpyCH4V TGCA 4 cut(s) 51, 239, 266, 404
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 2 cut(s) 85, 319
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 2 cut(s) 214, 234
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 1 cut(s) 169
MfeI CAATTG 1 cut(s) 267
MluCI AATT 7 cut(s) 114, 139, 234, 267, 348, 396, 422
MlyI GAGTC 1 cut(s) 426
MnlI CCTC 1 cut(s) 471
MseI TTAA 3 cut(s) 21, 117, 339
MslI CAYNNNNRTG 2 cut(s) 80, 150
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 202
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 166
MvnI CGCG 1 cut(s) 101
NciI CCSGG 1 cut(s) 202
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 85, 319
NruI TCGCGA 1 cut(s) 101
NspI RCATGY 1 cut(s) 85
PciI ACATGT 1 cut(s) 81
PctI GAATGC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PscI ACATGT 1 cut(s) 81
PspPI GGNCC 1 cut(s) 452
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 2 cut(s) 290, 411
RsaNI GTAC 2 cut(s) 289, 410
RseI CAYNNNNRTG 2 cut(s) 80, 150
SaqAI TTAA 3 cut(s) 21, 117, 339
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 1 cut(s) 202
SetI ASST 7 cut(s) 9, 176, 265, 310, 457, 463, 476
SfaNI GCATC 1 cut(s) 333
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 2 cut(s) 80, 150
Sse9I AATT 7 cut(s) 114, 139, 234, 267, 348, 396, 422
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 31, 122
TaqI TCGA 1 cut(s) 58
TasI AATT 7 cut(s) 114, 139, 234, 267, 348, 396, 422
TatI WGTACW 2 cut(s) 288, 409
Tru1I TTAA 3 cut(s) 21, 117, 339
Tru9I TTAA 3 cut(s) 21, 117, 339
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 4 cut(s) 122, 134, 272, 345
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 396
XceI RCATGY 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.