Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

31527981 .. 31531856

Gene Structure 3876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0288300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGTCATCAGCTGAGTCCTGTGGCTCGAGCTTGCTTCTGGCTCTGTCAGATGATGTGTTTTCCGTTATCACATGTTTCCTGTCACTTAAGGACATATGTAATCTGGGGCTATGCTGCCGGAATTTGTATGCACTTGTGGACTGTGAAAAGGTCTGGCTTACTCAATGTGAACAGGTTGGAATTGTCCCTCTCCAAGACCTCATTGAGTGGCGAAAGGCCGTCTCATCTTACAAGGCGCTCTGCCGCTTTCTGTTTAGTGTTCAGCCACTTATGGGAATATGGGTTCACCAGAATCCGGAGCTTGGGAATGTAGTCTATGTCATGCCTGGTTTTGTTTCTGTTGTTGGGTGCCGCGTAATACCTCAAGAGCTTGGCCCTTTAGGGATTGAAGATGGCCCTATTCTGTGGGCTCCTGTATTTGAAATTATTGGTGATTTTGATGGTTCGACAGCATTTTTTCTGCATGGAAGGGAGAAGGGATGTAACTATGTGTATCCTGGTTTAGTGAAACCGGTTGGCAGGTCATGTAATGTGTTGTTGCTTGAGATTGAGCCTAGACAACCAAAAAATGGGGGTAAATCGTTATTGCATAGCAACAGCTTTGTTCACTGTCCAGATCAGGAGCTGTCAAAGAATATTTGTAGGTCAAATAGTGGACTCTCAAGGTCACAGAGGGTGTTTGGACAGGGTGAAACACTGGTGCCCTTCAGTCGATTAGCATTCAGTGACAGAAGAAAATTGCTGGATGTTGTTACAAGCCAAATTCGTCTAAAGGTTCCTGATGTAGCAATTGGTCCAGTCTTTCCTCAGTTGAGGGACGATGAGGAGAACTTTCAGAAGGATATAGTGCTCTTATCTGAACGAAGATCAATGCTACTTCAAATGTGCAAGCTTGGTGAAGGTCACATGGATTCGAAGGCAAGTAGTCAACTGCAATGTGATCGTACTCAGCTGCAATTGAGTGAGTTCAGAAAGAGTCTTGATCGAACAAGTGATTTTCATAATACTATTAACGAAGACGCTGGTCACAGACAAAGCCCCAGGAAGAAATCTCTTGGCAGGTACTTTAAGGATAGTCTCAATCAAATACTGGGAAAGTCAATCTCAATCAATGGCAATTCAAAGAATAGTTCTTCCAGCAGTGAGAATAAGTATGCATCCCTTCCTGAGTTTCTGAGTTCAGGTGATACAATAGGACTGAGTTTACATGCTTCCACTGTGAAGTTATCTTCTTATCGAGCATGGCCAAACATGCATGATAGTCGATTTGCCATTTACAAATTGCCCTTGCGGATCCCAACTGCCGATCAAGAGTATGCTGGTTTATGGGGAGGGACTTTTGGTTGGCCTCCTGGGAAGCCCACCAAAGATAAGCCTGGAAAGGCTCTCTTCTTTCTTTTACTTTCTTATGAGGAGTGCCAGGGGCAACAACATCTGATTGCAACCAAAATTTTAGAGGGTACGCACTACGTTCTGCATCCTAATGGCTCAGCAATGTTCATAGTGAACATAGATGAACCTTCAACGGATCCATTCCCTTGGGATACTGATGTAGATTCCCTAAATGTGAACATAAAGCATGCTTTGAAAGGGGAGGGTATTGCAAATGGTTATGGTTTTAGATACCCAGGCTCGAAACCGGGTTCCCTCTTTGTATTTCAAGATGGTCACCTTGCCTTCATTTGGAAGGAGTCTAGGGCAGTCTTGACTTTGCAGAGGATTAACTTGCAAGAACTTTTGAGAAAAGGTGAAAGGGTGCCTGCGCTTCCTCCAATTGGTAACTTTTCGTATTTGACCAAGTCTTACTCAAACGTGTTTGCTGAGTTCCCCAACACCTCAACTACTTGGGCTTCAGCAAGGGAGGAGCAATCTGACGCCTTAGGTGAAAACTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

632

Amino Acids

70.45

Weight (kDa)

7.51

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	510, 1050
AccB1I	GGYRCC	3 cut(s)	348, 700, 1756
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccII	CGCG	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	3 cut(s)	244, 352, 1291
AclWI	GGATC	4 cut(s)	1288, 1301, 1523, 1536
AcoI	YGGCCR	1 cut(s)	1244
AcsI	RAATTY	3 cut(s)	121, 762, 1449
AcuI	CTGAAG	2 cut(s)	691, 1836
AcyI	GRCGYC	1 cut(s)	1875
AfaI	GTAC	3 cut(s)	946, 1064, 1462
AfiI	CCNNNNNNNGG	6 cut(s)	272, 295, 302, 569, 1683, 1775
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	2 cut(s)	71, 1812
AgeI	ACCGGT	1 cut(s)	511
AgsI	TTSAA	7 cut(s)	389, 422, 881, 1122, 1524, 1588, 1661
AjnI	CCWGG	7 cut(s)	325, 496, 1040, 1351, 1375, 1419, 1627
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	8 cut(s)	11, 30, 301, 370, 600, 625, 892, 952
AluI	AGCT	8 cut(s)	11, 30, 301, 370, 600, 625, 892, 952
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	2 cut(s)	226, 1082
AlwI	GGATC	4 cut(s)	1288, 1301, 1523, 1536
AlwNI	CAGNNNCTG	1 cut(s)	625
Ama87I	CYCGRG	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	5 cut(s)	216, 373, 394, 1244, 1346
ApeKI	GCWGC	2 cut(s)	114, 952
ApoI	RAATTY	3 cut(s)	121, 762, 1449
AsiGI	ACCGGT	1 cut(s)	511
AspLEI	GCGC	2 cut(s)	238, 1765
AspS9I	GGNCC	3 cut(s)	374, 395, 794
AsuC2I	CCSGG	1 cut(s)	1641
AsuHPI	GGTGA	8 cut(s)	278, 443, 701, 908, 1196, 1661, 1760, 1895
AsuII	TTCGAA	1 cut(s)	914
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	794
AxyI	CCTNAGG	1 cut(s)	1879
BaeGI	GKGCMC	1 cut(s)	705
BaeI	ACNNNNGTAYC	2 cut(s)	1536, 1569
BalI	TGGCCA	1 cut(s)	1246
BamHI	GGATCC	2 cut(s)	1293, 1528
BanI	GGYRCC	3 cut(s)	348, 700, 1756
BanII	GRGCYC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	1023
Bbv12I	GWGCWC	1 cut(s)	852
BbvI	GCAGC	2 cut(s)	101, 939
BccI	CCATC	3 cut(s)	386, 434, 1658
BceAI	ACGGC	1 cut(s)	203
BcgI	CGANNNNNNTGC	4 cut(s)	923, 957, 1244, 1278
BciT130I	CCWGG	7 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629
BciVI	GTATCC	2 cut(s)	504, 1537
BcnI	CCSGG	1 cut(s)	1641
BcoDI	GTCTC	2 cut(s)	226, 1082
BfaI	CTAG	2 cut(s)	555, 1695
BfmI	CTRYAG	1 cut(s)	1891
BfoI	RGCGCY	1 cut(s)	239
BfrI	CTTAAG	1 cut(s)	86
BfuAI	ACCTGC	2 cut(s)	510, 1050
BfuI	GTATCC	2 cut(s)	504, 1537
BisI	GCNGC	4 cut(s)	115, 244, 352, 953
BlpI	GCTNAGC	1 cut(s)	1489
BlsI	GCNGC	4 cut(s)	116, 245, 353, 954
Bme1390I	CCNGG	8 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629, 1641
Bme18I	GGWCC	1 cut(s)	794
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	374, 395, 794
BmiI	GGNNCC	8 cut(s)	350, 411, 702, 777, 1295, 1530, 1645, 1758
BmrFI	CCNGG	8 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629, 1641
BmrI	ACTGGG	1 cut(s)	1100
BmsI	GCATC	2 cut(s)	1166, 1486
BmuI	ACTGGG	1 cut(s)	1100
BoxI	GACNNNNGTC	1 cut(s)	1023
BpiI	GAAGAC	1 cut(s)	1023
Bpu1102I	GCTNAGC	1 cut(s)	1489
Bpu14I	TTCGAA	1 cut(s)	914
BpuEI	CTTGAG	3 cut(s)	348, 563, 646
BpuMI	CCSGG	1 cut(s)	1641
BsaHI	GRCGYC	1 cut(s)	1875
BsaJI	CCNNGG	5 cut(s)	1040, 1352, 1420, 1538, 1627
BsaWI	WCCGGW	2 cut(s)	295, 511
Bsc4I	CCNNNNNNNGG	6 cut(s)	272, 295, 302, 569, 1683, 1775
Bse118I	RCCGGY	1 cut(s)	511
Bse1I	ACTGG	3 cut(s)	702, 797, 1095
Bse21I	CCTNAGG	1 cut(s)	1879
Bse3DI	GCAATG	2 cut(s)	941, 1500
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	7 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629
BseDI	CCNNGG	5 cut(s)	1040, 1352, 1420, 1538, 1627
BseGI	GGATG	4 cut(s)	485, 751, 1157, 1477
BseLI	CCNNNNNNNGG	6 cut(s)	272, 295, 302, 569, 1683, 1775
BseMI	GCAATG	2 cut(s)	941, 1500
BseMII	CTCAG	7 cut(s)	821, 962, 1158, 1166, 1190, 1503, 1812
BseNI	ACTGG	3 cut(s)	702, 797, 1095
BseRI	GAGGAG	3 cut(s)	839, 1427, 1877
BseSI	GKGCMC	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	101, 939
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	5 cut(s)	218, 375, 396, 1246, 1348
BshNI	GGYRCC	3 cut(s)	348, 700, 1756
BshTI	ACCGGT	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	4 cut(s)	118, 296, 512, 1640
BslFI	GGGAC	3 cut(s)	170, 830, 1348
BslI	CCNNNNNNNGG	6 cut(s)	272, 295, 302, 569, 1683, 1775
BsmAI	GTCTC	2 cut(s)	226, 1082
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	3 cut(s)	170, 830, 1348
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	5 cut(s)	218, 375, 396, 1246, 1348
BsoBI	CYCGRG	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	914
Bsp1286I	GDGCHC	3 cut(s)	412, 705, 852
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	7 cut(s)	616, 866, 940, 982, 1293, 1306, 1528
Bsp1720I	GCTNAGC	1 cut(s)	1489
BspACI	CCGC	3 cut(s)	244, 352, 1291
BspANI	GGCC	5 cut(s)	218, 375, 396, 1246, 1348
BspCNI	CTCAG	8 cut(s)	4, 820, 961, 1159, 1167, 1191, 1502, 1813
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	8 cut(s)	350, 411, 702, 777, 1295, 1530, 1645, 1758
BspMI	ACCTGC	2 cut(s)	510, 1050
BspPI	GGATC	4 cut(s)	1288, 1301, 1523, 1536
BspT104I	TTCGAA	1 cut(s)	914
BspT107I	GGYRCC	3 cut(s)	348, 700, 1756
BspTI	CTTAAG	1 cut(s)	86
BsrDI	GCAATG	2 cut(s)	941, 1500
BsrFI	RCCGGY	1 cut(s)	511
BsrI	ACTGG	3 cut(s)	702, 797, 1095
BssAI	RCCGGY	1 cut(s)	511
BssECI	CCNNGG	5 cut(s)	1040, 1352, 1420, 1538, 1627
BssMI	GATC	7 cut(s)	616, 866, 940, 982, 1293, 1306, 1528
BssNI	GRCGYC	1 cut(s)	1875
BssT1I	CCWWGG	1 cut(s)	1538
Bst2UI	CCWGG	7 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629
Bst4CI	ACNGT	3 cut(s)	143, 611, 1219
Bst6I	CTCTTC	1 cut(s)	1394
BstACI	GRCGYC	1 cut(s)	1875
BstAFI	CTTAAG	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	914
BstC8I	GCNNGC	4 cut(s)	32, 890, 1581, 1761
BstDEI	CTNAG	9 cut(s)	12, 807, 948, 1167, 1175, 1199, 1489, 1821, 1879
BstEII	GGTNACC	1 cut(s)	1667
BstF5I	GGATG	4 cut(s)	485, 751, 1157, 1477
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 1765
BstKTI	GATC	7 cut(s)	619, 869, 943, 985, 1296, 1309, 1531
BstMAI	GTCTC	2 cut(s)	226, 1082
BstMBI	GATC	7 cut(s)	616, 866, 940, 982, 1293, 1306, 1528
BstMWI	GCNNNNNNNGC	1 cut(s)	1252
BstNI	CCWGG	7 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629
BstNSI	RCATGY	4 cut(s)	75, 1211, 1255, 1583
BstPAI	GACNNNNGTC	1 cut(s)	1023
BstPI	GGTNACC	1 cut(s)	1667
BstSCI	CCNGG	8 cut(s)	325, 496, 1040, 1351, 1375, 1419, 1627, 1639
BstSFI	CTRYAG	1 cut(s)	1891
BstSLI	GKGCMC	1 cut(s)	705
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	101, 939
BstV2I	GAAGAC	1 cut(s)	1023
BstX2I	RGATCY	2 cut(s)	1293, 1528
BstXI	CCANNNNNNTGG	1 cut(s)	1539
BstYI	RGATCY	2 cut(s)	1293, 1528
Bsu36I	CCTNAGG	1 cut(s)	1879
BsuI	GTATCC	2 cut(s)	504, 1537
BsuRI	GGCC	5 cut(s)	218, 375, 396, 1246, 1348
BtsCI	GGATG	4 cut(s)	485, 751, 1157, 1477
BtsI	GCAGTG	1 cut(s)	1147
BtsIMutI	CAGTG	5 cut(s)	607, 695, 730, 1147, 1215
BveI	ACCTGC	2 cut(s)	510, 1050
Cac8I	GCNNGC	4 cut(s)	32, 890, 1581, 1761
CaiI	CAGNNNCTG	1 cut(s)	625
CfoI	GCGC	2 cut(s)	238, 1765
Cfr10I	RCCGGY	1 cut(s)	511
Cfr13I	GGNCC	3 cut(s)	374, 395, 794
CseI	GACGC	2 cut(s)	1028, 1883
Csp6I	GTAC	3 cut(s)	945, 1063, 1461
CspAI	ACCGGT	1 cut(s)	511
CviQI	GTAC	3 cut(s)	945, 1063, 1461
DdeI	CTNAG	9 cut(s)	12, 807, 948, 1167, 1175, 1199, 1489, 1821, 1879
DpnI	GATC	7 cut(s)	618, 868, 942, 984, 1295, 1308, 1530
DpnII	GATC	7 cut(s)	616, 866, 940, 982, 1293, 1306, 1528
EaeI	YGGCCR	1 cut(s)	1244
Eam1104I	CTCTTC	1 cut(s)	1394
EarI	CTCTTC	1 cut(s)	1394
Eco130I	CCWWGG	1 cut(s)	1538
Eco24I	GRGCYC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	794
Eco57I	CTGAAG	2 cut(s)	691, 1836
Eco81I	CCTNAGG	1 cut(s)	1879
Eco88I	CYCGRG	1 cut(s)	25
Eco91I	GGTNACC	1 cut(s)	1667
EcoO65I	GGTNACC	1 cut(s)	1667
EcoRII	CCWGG	7 cut(s)	325, 496, 1040, 1351, 1375, 1419, 1627
EcoT14I	CCWWGG	1 cut(s)	1538
EcoT22I	ATGCAT	2 cut(s)	1159, 1257
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	1538
Esp3I	CGTCTC	1 cut(s)	226
FalI	AAGNNNNNCTT	2 cut(s)	1373, 1405
FaqI	GGGAC	3 cut(s)	170, 830, 1348
FauNDI	CATATG	1 cut(s)	95
Fnu4HI	GCNGC	4 cut(s)	115, 244, 352, 953
FokI	GGATG	4 cut(s)	492, 758, 1144, 1464
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	4 cut(s)	115, 244, 352, 953
FspBI	CTAG	2 cut(s)	555, 1695
GlaI	GCGC	2 cut(s)	237, 1764
GluI	GCNGC	4 cut(s)	115, 244, 352, 953
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	5 cut(s)	218, 375, 396, 1246, 1348
HapII	CCGG	4 cut(s)	118, 296, 512, 1640
HgaI	GACGC	2 cut(s)	1028, 1883
HhaI	GCGC	2 cut(s)	238, 1765
Hin1I	GRCGYC	1 cut(s)	1875
Hin6I	GCGC	2 cut(s)	236, 1763
HinP1I	GCGC	2 cut(s)	236, 1763
HincII	GTYRAC	1 cut(s)	929
HindII	GTYRAC	1 cut(s)	929
HindIII	AAGCTT	1 cut(s)	890
HinfI	GANTC	7 cut(s)	14, 292, 657, 911, 976, 1556, 1691
HpaII	CCGG	4 cut(s)	118, 296, 512, 1640
HphI	GGTGA	8 cut(s)	278, 443, 701, 908, 1196, 1661, 1760, 1895
Hpy166II	GTNNAC	9 cut(s)	139, 170, 286, 607, 656, 929, 1205, 1507, 1570
Hpy188I	TCNGA	7 cut(s)	49, 837, 859, 971, 1176, 1437, 1873
Hpy8I	GTNNAC	9 cut(s)	139, 170, 286, 607, 656, 929, 1205, 1507, 1570
HpyCH4III	ACNGT	3 cut(s)	143, 611, 1219
HpyCH4IV	ACGT	2 cut(s)	1470, 1812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1252
HpyF3I	CTNAG	9 cut(s)	12, 807, 948, 1167, 1175, 1199, 1489, 1821, 1879
HpySE526I	ACGT	2 cut(s)	1470, 1812
Hsp92I	GRCGYC	1 cut(s)	1875
HspAI	GCGC	2 cut(s)	236, 1763
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	7 cut(s)	616, 866, 940, 982, 1293, 1306, 1528
LmnI	GCTCC	4 cut(s)	298, 415, 622, 1864
Lsp1109I	GCAGC	2 cut(s)	101, 939
LweI	GCATC	2 cut(s)	1166, 1486
MaeI	CTAG	2 cut(s)	555, 1695
MaeII	ACGT	2 cut(s)	1470, 1812
MaeIII	GTNAC	9 cut(s)	81, 482, 666, 725, 751, 902, 1025, 1667, 1778
MalI	GATC	7 cut(s)	618, 868, 942, 984, 1295, 1308, 1530
MboI	GATC	7 cut(s)	616, 866, 940, 982, 1293, 1306, 1528
MboII	GAAGA	8 cut(s)	401, 744, 876, 1028, 1057, 1125, 1221, 1381
MfeI	CAATTG	3 cut(s)	789, 956, 1773
MflI	RGATCY	2 cut(s)	1293, 1528
MhlI	GDGCHC	3 cut(s)	412, 705, 852
MlsI	TGGCCA	1 cut(s)	1246
MluNI	TGGCCA	1 cut(s)	1246
MlyI	GAGTC	4 cut(s)	23, 651, 985, 1700
MmeI	TCCRAC	1 cut(s)	157
Mox20I	TGGCCA	1 cut(s)	1246
Mph1103I	ATGCAT	2 cut(s)	1159, 1257
MroI	TCCGGA	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	1246
MseI	TTAA	4 cut(s)	87, 1011, 1068, 1722
MslI	CAYNNNNRTG	1 cut(s)	1482
Msp20I	TGGCCA	1 cut(s)	1246
MspA1I	CMGCKG	2 cut(s)	11, 952
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	4 cut(s)	118, 296, 512, 1640
MspR9I	CCNGG	8 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629, 1641
MunI	CAATTG	3 cut(s)	789, 956, 1773
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	7 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	1252
NciI	CCSGG	1 cut(s)	1641
NdeI	CATATG	1 cut(s)	95
NdeII	GATC	7 cut(s)	616, 866, 940, 982, 1293, 1306, 1528
NlaIV	GGNNCC	8 cut(s)	350, 411, 702, 777, 1295, 1530, 1645, 1758
NmuCI	GTSAC	6 cut(s)	81, 666, 725, 902, 1025, 1667
NsiI	ATGCAT	2 cut(s)	1159, 1257
NspI	RCATGY	4 cut(s)	75, 1211, 1255, 1583
NspV	TTCGAA	1 cut(s)	914
PaeI	GCATGC	1 cut(s)	1583
PaeR7I	CTCGAG	1 cut(s)	25
PciI	ACATGT	1 cut(s)	71
PctI	GAATGC	1 cut(s)	719
PfeI	GAWTC	3 cut(s)	292, 911, 1556
PflFI	GACNNNGTC	1 cut(s)	1798
PflMI	CCANNNNNTGG	1 cut(s)	569
PinAI	ACCGGT	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	116, 245, 353, 954
PleI	GAGTC	4 cut(s)	22, 651, 984, 1699
PpsI	GAGTC	4 cut(s)	22, 651, 984, 1699
PscI	ACATGT	1 cut(s)	71
PshAI	GACNNNNGTC	1 cut(s)	1023
Psp6I	CCWGG	7 cut(s)	325, 496, 1040, 1351, 1375, 1419, 1627
PspEI	GGTNACC	1 cut(s)	1667
PspGI	CCWGG	7 cut(s)	325, 496, 1040, 1351, 1375, 1419, 1627
PspN4I	GGNNCC	8 cut(s)	350, 411, 702, 777, 1295, 1530, 1645, 1758
PspPI	GGNCC	3 cut(s)	374, 395, 794
PspXI	VCTCGAGB	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	625
PsuI	RGATCY	2 cut(s)	1293, 1528
PsyI	GACNNNGTC	1 cut(s)	1798
PvuII	CAGCTG	2 cut(s)	11, 952
RsaI	GTAC	3 cut(s)	946, 1064, 1462
RsaNI	GTAC	3 cut(s)	945, 1063, 1461
RseI	CAYNNNNRTG	1 cut(s)	1482
SaqAI	TTAA	4 cut(s)	87, 1011, 1068, 1722
SatI	GCNGC	4 cut(s)	115, 244, 352, 953
Sau3AI	GATC	7 cut(s)	616, 866, 940, 982, 1293, 1306, 1528
Sau96I	GGNCC	3 cut(s)	374, 395, 794
SchI	GAGTC	4 cut(s)	23, 651, 985, 1700
ScrFI	CCNGG	8 cut(s)	327, 498, 1042, 1353, 1377, 1421, 1629, 1641
SduI	GDGCHC	3 cut(s)	412, 705, 852
SfaNI	GCATC	2 cut(s)	1166, 1486
SfcI	CTRYAG	1 cut(s)	1891
Sfr274I	CTCGAG	1 cut(s)	25
SfuI	TTCGAA	1 cut(s)	914
SinI	GGWCC	1 cut(s)	794
SlaI	CTCGAG	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	1482
SmlI	CTYRAG	5 cut(s)	25, 86, 363, 542, 661
SmoI	CTYRAG	5 cut(s)	25, 86, 363, 542, 661
SphI	GCATGC	1 cut(s)	1583
SsiI	CCGC	3 cut(s)	244, 352, 1291
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	2 cut(s)	555, 1695
StyD4I	CCNGG	8 cut(s)	325, 496, 1040, 1351, 1375, 1419, 1627, 1639
StyI	CCWWGG	1 cut(s)	1538
TaaI	ACNGT	3 cut(s)	143, 611, 1219
TaiI	ACGT	2 cut(s)	1473, 1815
TaqI	TCGA	8 cut(s)	26, 446, 712, 914, 985, 1237, 1264, 1634
TauI	GCSGC	2 cut(s)	246, 354
TfiI	GAWTC	3 cut(s)	292, 911, 1556
Tru1I	TTAA	4 cut(s)	87, 1011, 1068, 1722
Tru9I	TTAA	4 cut(s)	87, 1011, 1068, 1722
TscAI	CASTG	5 cut(s)	614, 702, 730, 1147, 1222
TseFI	GTSAC	6 cut(s)	81, 666, 725, 902, 1025, 1667
TseI	GCWGC	2 cut(s)	114, 952
Tsp45I	GTSAC	6 cut(s)	81, 666, 725, 902, 1025, 1667
TspDTI	ATGAA	4 cut(s)	989, 1489, 1530, 1669
TspGWI	ACGGA	2 cut(s)	52, 1541
TspRI	CASTG	5 cut(s)	614, 702, 730, 1147, 1222
Tth111I	GACNNNGTC	1 cut(s)	1798
Van91I	CCANNNNNTGG	1 cut(s)	569
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	794
XapI	RAATTY	3 cut(s)	121, 762, 1449
XceI	RCATGY	4 cut(s)	75, 1211, 1255, 1583
XhoI	CTCGAG	1 cut(s)	25
XspI	CTAG	2 cut(s)	555, 1695
Zsp2I	ATGCAT	2 cut(s)	1159, 1257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.