Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UPF0014 | PF03649 | 59 - 292 | 1.5e-67 | Uncharacterised protein family (UPF0014) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 374 |
| AciI | CCGC | 2 cut(s) | 180, 203 |
| AclWI | GGATC | 1 cut(s) | 344 |
| AcoI | YGGCCR | 1 cut(s) | 177 |
| AfaI | GTAC | 1 cut(s) | 222 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 358, 521, 757 |
| AflIII | ACRYGT | 1 cut(s) | 400 |
| AgsI | TTSAA | 2 cut(s) | 453, 656 |
| AjnI | CCWGG | 3 cut(s) | 81, 263, 733 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 218, 250, 636, 656, 668, 688 |
| AleI | CACNNNNGTG | 1 cut(s) | 188 |
| AluBI | AGCT | 7 cut(s) | 229, 280, 623, 671, 767, 790, 884 |
| AluI | AGCT | 7 cut(s) | 229, 280, 623, 671, 767, 790, 884 |
| Alw21I | GWGCWC | 1 cut(s) | 480 |
| Alw26I | GTCTC | 5 cut(s) | 367, 605, 693, 725, 890 |
| AlwI | GGATC | 1 cut(s) | 344 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 229 |
| AoxI | GGCC | 4 cut(s) | 177, 748, 780, 863 |
| ApeKI | GCWGC | 4 cut(s) | 74, 196, 277, 837 |
| AspLEI | GCGC | 1 cut(s) | 211 |
| AsuC2I | CCSGG | 1 cut(s) | 556 |
| AsuHPI | GGTGA | 3 cut(s) | 178, 673, 688 |
| BbsI | GAAGAC | 1 cut(s) | 898 |
| Bbv12I | GWGCWC | 1 cut(s) | 480 |
| BbvI | GCAGC | 4 cut(s) | 61, 183, 289, 849 |
| BccI | CCATC | 3 cut(s) | 136, 241, 523 |
| BceAI | ACGGC | 1 cut(s) | 630 |
| BciT130I | CCWGG | 3 cut(s) | 83, 265, 735 |
| BcnI | CCSGG | 1 cut(s) | 556 |
| BcoDI | GTCTC | 5 cut(s) | 367, 605, 693, 725, 890 |
| BfaI | CTAG | 5 cut(s) | 318, 408, 626, 698, 776 |
| BfmI | CTRYAG | 1 cut(s) | 791 |
| BfoI | RGCGCY | 1 cut(s) | 212 |
| BfuAI | ACCTGC | 1 cut(s) | 374 |
| BisI | GCNGC | 5 cut(s) | 75, 180, 197, 278, 838 |
| BlsI | GCNGC | 5 cut(s) | 76, 181, 198, 279, 839 |
| Bme1390I | CCNGG | 4 cut(s) | 83, 265, 556, 735 |
| BmrFI | CCNGG | 4 cut(s) | 83, 265, 556, 735 |
| BmsI | GCATC | 5 cut(s) | 14, 103, 440, 833, 849 |
| BoxI | GACNNNNGTC | 1 cut(s) | 902 |
| BpiI | GAAGAC | 1 cut(s) | 898 |
| BpmI | CTGGAG | 1 cut(s) | 756 |
| BpuEI | CTTGAG | 1 cut(s) | 140 |
| BpuMI | CCSGG | 1 cut(s) | 556 |
| BsaI | GGTCTC | 3 cut(s) | 367, 725, 890 |
| BsaJI | CCNNGG | 4 cut(s) | 186, 264, 555, 900 |
| BsaWI | WCCGGW | 1 cut(s) | 691 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 358, 521, 757 |
| Bse1I | ACTGG | 1 cut(s) | 751 |
| Bse3DI | GCAATG | 2 cut(s) | 549, 747 |
| BseBI | CCWGG | 3 cut(s) | 83, 265, 735 |
| BseDI | CCNNGG | 4 cut(s) | 186, 264, 555, 900 |
| BseGI | GGATG | 2 cut(s) | 35, 147 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 358, 521, 757 |
| BseMI | GCAATG | 2 cut(s) | 549, 747 |
| BseNI | ACTGG | 1 cut(s) | 751 |
| BseXI | GCAGC | 4 cut(s) | 61, 183, 289, 849 |
| BseYI | CCCAGC | 1 cut(s) | 229 |
| BsgI | GTGCAG | 1 cut(s) | 296 |
| BshFI | GGCC | 4 cut(s) | 179, 750, 782, 865 |
| BsiHKAI | GWGCWC | 1 cut(s) | 480 |
| BsiSI | CCGG | 3 cut(s) | 522, 555, 692 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 358, 521, 757 |
| BsmAI | GTCTC | 5 cut(s) | 367, 605, 693, 725, 890 |
| BsmBI | CGTCTC | 1 cut(s) | 605 |
| BsnI | GGCC | 4 cut(s) | 179, 750, 782, 865 |
| Bso31I | GGTCTC | 3 cut(s) | 367, 725, 890 |
| Bsp1286I | GDGCHC | 1 cut(s) | 480 |
| Bsp1407I | TGTACA | 1 cut(s) | 220 |
| Bsp143I | GATC | 1 cut(s) | 336 |
| BspACI | CCGC | 2 cut(s) | 180, 203 |
| BspANI | GGCC | 4 cut(s) | 179, 750, 782, 865 |
| BspHI | TCATGA | 1 cut(s) | 804 |
| BspMI | ACCTGC | 1 cut(s) | 374 |
| BspPI | GGATC | 1 cut(s) | 344 |
| BspTNI | GGTCTC | 3 cut(s) | 367, 725, 890 |
| BsrDI | GCAATG | 2 cut(s) | 549, 747 |
| BsrGI | TGTACA | 1 cut(s) | 220 |
| BsrI | ACTGG | 1 cut(s) | 751 |
| BssECI | CCNNGG | 4 cut(s) | 186, 264, 555, 900 |
| BssMI | GATC | 1 cut(s) | 336 |
| BssT1I | CCWWGG | 1 cut(s) | 900 |
| Bst2UI | CCWGG | 3 cut(s) | 83, 265, 735 |
| Bst4CI | ACNGT | 3 cut(s) | 187, 550, 715 |
| Bst6I | CTCTTC | 1 cut(s) | 659 |
| BstAUI | TGTACA | 1 cut(s) | 220 |
| BstC8I | GCNNGC | 3 cut(s) | 201, 373, 867 |
| BstDSI | CCRYGG | 1 cut(s) | 186 |
| BstF5I | GGATG | 2 cut(s) | 35, 147 |
| BstH2I | RGCGCY | 1 cut(s) | 212 |
| BstHHI | GCGC | 1 cut(s) | 211 |
| BstKTI | GATC | 1 cut(s) | 339 |
| BstMAI | GTCTC | 5 cut(s) | 367, 605, 693, 725, 890 |
| BstMBI | GATC | 1 cut(s) | 336 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 629 |
| BstNI | CCWGG | 3 cut(s) | 83, 265, 735 |
| BstNSI | RCATGY | 2 cut(s) | 221, 404 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 902 |
| BstSCI | CCNGG | 4 cut(s) | 81, 263, 554, 733 |
| BstSFI | CTRYAG | 1 cut(s) | 791 |
| BstV1I | GCAGC | 4 cut(s) | 61, 183, 289, 849 |
| BstV2I | GAAGAC | 1 cut(s) | 898 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 190 |
| BsuRI | GGCC | 4 cut(s) | 179, 750, 782, 865 |
| BtgI | CCRYGG | 1 cut(s) | 186 |
| BtsCI | GGATG | 2 cut(s) | 35, 147 |
| BveI | ACCTGC | 1 cut(s) | 374 |
| Cac8I | GCNNGC | 3 cut(s) | 201, 373, 867 |
| CaiI | CAGNNNCTG | 1 cut(s) | 229 |
| CciI | TCATGA | 1 cut(s) | 804 |
| CfoI | GCGC | 1 cut(s) | 211 |
| CsiI | ACCWGGT | 1 cut(s) | 81 |
| Csp6I | GTAC | 1 cut(s) | 221 |
| CviAII | CATG | 6 cut(s) | 138, 163, 218, 358, 401, 805 |
| CviQI | GTAC | 1 cut(s) | 221 |
| DpnI | GATC | 1 cut(s) | 338 |
| DpnII | GATC | 1 cut(s) | 336 |
| EaeI | YGGCCR | 1 cut(s) | 177 |
| Eam1104I | CTCTTC | 1 cut(s) | 659 |
| EarI | CTCTTC | 1 cut(s) | 659 |
| Eco130I | CCWWGG | 1 cut(s) | 900 |
| Eco31I | GGTCTC | 3 cut(s) | 367, 725, 890 |
| Eco32I | GATATC | 1 cut(s) | 586 |
| EcoRII | CCWGG | 3 cut(s) | 81, 263, 733 |
| EcoRV | GATATC | 1 cut(s) | 586 |
| EcoT14I | CCWWGG | 1 cut(s) | 900 |
| ErhI | CCWWGG | 1 cut(s) | 900 |
| Esp3I | CGTCTC | 1 cut(s) | 605 |
| FaeI | CATG | 6 cut(s) | 141, 166, 221, 361, 404, 808 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 636, 668 |
| FatI | CATG | 6 cut(s) | 137, 162, 217, 357, 400, 804 |
| Fnu4HI | GCNGC | 5 cut(s) | 75, 180, 197, 278, 838 |
| FokI | GGATG | 2 cut(s) | 22, 154 |
| Fsp4HI | GCNGC | 5 cut(s) | 75, 180, 197, 278, 838 |
| FspBI | CTAG | 5 cut(s) | 318, 408, 626, 698, 776 |
| GlaI | GCGC | 1 cut(s) | 210 |
| GluI | GCNGC | 5 cut(s) | 75, 180, 197, 278, 838 |
| GsaI | CCCAGC | 1 cut(s) | 233 |
| GsuI | CTGGAG | 1 cut(s) | 756 |
| HaeII | RGCGCY | 1 cut(s) | 212 |
| HaeIII | GGCC | 4 cut(s) | 179, 750, 782, 865 |
| HapII | CCGG | 3 cut(s) | 522, 555, 692 |
| HhaI | GCGC | 1 cut(s) | 211 |
| Hin1II | CATG | 6 cut(s) | 141, 166, 221, 361, 404, 808 |
| Hin6I | GCGC | 1 cut(s) | 209 |
| HinP1I | GCGC | 1 cut(s) | 209 |
| HincII | GTYRAC | 1 cut(s) | 849 |
| HindII | GTYRAC | 1 cut(s) | 849 |
| HindIII | AAGCTT | 1 cut(s) | 882 |
| HpaII | CCGG | 3 cut(s) | 522, 555, 692 |
| HphI | GGTGA | 3 cut(s) | 178, 673, 688 |
| Hpy166II | GTNNAC | 3 cut(s) | 148, 253, 849 |
| Hpy188I | TCNGA | 2 cut(s) | 536, 590 |
| Hpy188III | TCNNGA | 3 cut(s) | 578, 698, 805 |
| Hpy8I | GTNNAC | 3 cut(s) | 148, 253, 849 |
| HpyAV | CCTTC | 3 cut(s) | 476, 502, 880 |
| HpyCH4III | ACNGT | 3 cut(s) | 187, 550, 715 |
| HpyCH4V | TGCA | 5 cut(s) | 277, 304, 425, 542, 824 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 629 |
| Hsp92II | CATG | 6 cut(s) | 141, 166, 221, 361, 404, 808 |
| HspAI | GCGC | 1 cut(s) | 209 |
| Kzo9I | GATC | 1 cut(s) | 336 |
| LmnI | GCTCC | 3 cut(s) | 629, 737, 764 |
| Lsp1109I | GCAGC | 4 cut(s) | 61, 183, 289, 849 |
| LweI | GCATC | 5 cut(s) | 14, 103, 440, 833, 849 |
| MabI | ACCWGGT | 1 cut(s) | 81 |
| MaeI | CTAG | 5 cut(s) | 318, 408, 626, 698, 776 |
| MaeIII | GTNAC | 2 cut(s) | 550, 559 |
| MalI | GATC | 1 cut(s) | 338 |
| MboI | GATC | 1 cut(s) | 336 |
| MboII | GAAGA | 7 cut(s) | 80, 83, 86, 89, 92, 676, 898 |
| MhlI | GDGCHC | 1 cut(s) | 480 |
| MluCI | AATT | 3 cut(s) | 453, 816, 831 |
| MmeI | TCCRAC | 2 cut(s) | 424, 514 |
| MnlI | CCTC | 4 cut(s) | 183, 404, 761, 772 |
| MslI | CAYNNNNRTG | 2 cut(s) | 188, 856 |
| MspI | CCGG | 3 cut(s) | 522, 555, 692 |
| MspR9I | CCNGG | 4 cut(s) | 83, 265, 556, 735 |
| MvaI | CCWGG | 3 cut(s) | 83, 265, 735 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 629 |
| NciI | CCSGG | 1 cut(s) | 556 |
| NdeII | GATC | 1 cut(s) | 336 |
| NlaIII | CATG | 6 cut(s) | 141, 166, 221, 361, 404, 808 |
| NspI | RCATGY | 2 cut(s) | 221, 404 |
| OliI | CACNNNNGTG | 1 cut(s) | 188 |
| PagI | TCATGA | 1 cut(s) | 804 |
| PciI | ACATGT | 1 cut(s) | 400 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 711 |
| PfoI | TCCNGGA | 1 cut(s) | 733 |
| PkrI | GCNGC | 5 cut(s) | 76, 181, 198, 279, 839 |
| PscI | ACATGT | 1 cut(s) | 400 |
| PshAI | GACNNNNGTC | 1 cut(s) | 902 |
| Psp6I | CCWGG | 3 cut(s) | 81, 263, 733 |
| PspFI | CCCAGC | 1 cut(s) | 229 |
| PspGI | CCWGG | 3 cut(s) | 81, 263, 733 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 439, 471 |
| PstNI | CAGNNNCTG | 1 cut(s) | 229 |
| RsaI | GTAC | 1 cut(s) | 222 |
| RsaNI | GTAC | 1 cut(s) | 221 |
| RseI | CAYNNNNRTG | 2 cut(s) | 188, 856 |
| SatI | GCNGC | 5 cut(s) | 75, 180, 197, 278, 838 |
| Sau3AI | GATC | 1 cut(s) | 336 |
| ScrFI | CCNGG | 4 cut(s) | 83, 265, 556, 735 |
| SduI | GDGCHC | 1 cut(s) | 480 |
| SexAI | ACCWGGT | 1 cut(s) | 81 |
| SfaNI | GCATC | 5 cut(s) | 14, 103, 440, 833, 849 |
| SfcI | CTRYAG | 1 cut(s) | 791 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 188, 856 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| Sse9I | AATT | 3 cut(s) | 453, 816, 831 |
| SsiI | CCGC | 2 cut(s) | 180, 203 |
| SspI | AATATT | 1 cut(s) | 438 |
| SspMI | CTAG | 5 cut(s) | 318, 408, 626, 698, 776 |
| StyD4I | CCNGG | 4 cut(s) | 81, 263, 554, 733 |
| StyI | CCWWGG | 1 cut(s) | 900 |
| TaaI | ACNGT | 3 cut(s) | 187, 550, 715 |
| TaqI | TCGA | 2 cut(s) | 284, 577 |
| TasI | AATT | 3 cut(s) | 453, 816, 831 |
| TatI | WGTACW | 1 cut(s) | 220 |
| TauI | GCSGC | 1 cut(s) | 182 |
| TseI | GCWGC | 4 cut(s) | 74, 196, 277, 837 |
| TspDTI | ATGAA | 5 cut(s) | 298, 346, 581, 614, 821 |
| TspGWI | ACGGA | 1 cut(s) | 93 |
| XbaI | TCTAGA | 1 cut(s) | 697 |
| XceI | RCATGY | 2 cut(s) | 221, 404 |
| XspI | CTAG | 5 cut(s) | 318, 408, 626, 698, 776 |