Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

30565008 .. 30569535

Gene Structure 4528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0296600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGAAACTAATGCTGTATCCCAAGGGTACTAGCACCAGTAGTGATTATCTTTCTCTGTTCTTGGTATTGGATAATCCAGCTGTCCTTCCTCCTGGCTCTGAAGTATTTGCAGAGTTTACATTGCGAATTCTAGATCTGAACTGCGGCAAACATCATTCTCTTAAAAGTGAACAGTGGTTCAGTGCCTCGAGTTGGTCTTGGGGATGGGATGAGTTCCTCACACAGAGGGCCAAGTTTTTCAAGAAAGATCAATGCATTGTGGAGGCAGAAATCACTATTAAAGGAATTTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

111

Amino Acids

12.57

Weight (kDa)

6.71

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	15 - 104	2.1e-15	MATH domain
MATH	PF00917	25 - 106	1.8e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	165, 324
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	165, 324
AspS9I	GGNCC	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	66
BfaI	CTAG	3 cut(s)	69, 170, 330
BfmI	CTRYAG	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	2 cut(s)	30, 184
BlsI	GCNGC	2 cut(s)	31, 185
Bme1390I	CCNGG	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	248, 253
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	231
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	3, 172, 286
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	3 cut(s)	3, 172, 286
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	19, 213
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	23, 38
BstF5I	GGATG	2 cut(s)	248, 253
BstKTI	GATC	3 cut(s)	6, 175, 289
BstMBI	GATC	3 cut(s)	3, 172, 286
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	248, 253
BtsIMutI	CAGTG	3 cut(s)	24, 218, 226
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	66
CviJI	RGCY	4 cut(s)	36, 119, 135, 269
CviKI_1	RGCY	4 cut(s)	36, 119, 135, 269
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	2 cut(s)	23, 38
DpnI	GATC	3 cut(s)	5, 174, 288
DpnII	GATC	3 cut(s)	3, 172, 286
Eco130I	CCWWGG	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	60
FaiI	YATR	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	30, 184
FokI	GGATG	2 cut(s)	255, 260
Fsp4HI	GCNGC	2 cut(s)	30, 184
FspBI	CTAG	3 cut(s)	69, 170, 330
GluI	GCNGC	2 cut(s)	30, 184
HaeIII	GGCC	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	156, 209
Hpy188I	TCNGA	2 cut(s)	139, 177
Hpy188III	TCNNGA	2 cut(s)	170, 280
Hpy8I	GTNNAC	2 cut(s)	156, 209
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	2 cut(s)	19, 213
HpyCH4V	TGCA	3 cut(s)	32, 149, 294
HpyF3I	CTNAG	2 cut(s)	23, 38
Kzo9I	GATC	3 cut(s)	3, 172, 286
LpnPI	CCDG	4 cut(s)	88, 117, 129, 144
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	69, 170, 330
MalI	GATC	3 cut(s)	5, 174, 288
MboI	GATC	3 cut(s)	3, 172, 286
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	2 cut(s)	165, 324
MnlI	CCTC	5 cut(s)	138, 235, 258, 266, 295
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	3 cut(s)	201, 318, 334
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	3, 172, 286
NsiI	ATGCAT	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	31, 185
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	267
PspXI	VCTCGAGB	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	201, 318, 334
SatI	GCNGC	2 cut(s)	30, 184
Sau3AI	GATC	3 cut(s)	3, 172, 286
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	2 cut(s)	165, 324
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	3 cut(s)	69, 170, 330
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	19, 213
TaqI	TCGA	1 cut(s)	227
TasI	AATT	2 cut(s)	165, 324
TauI	GCSGC	1 cut(s)	186
Tru1I	TTAA	3 cut(s)	201, 318, 334
Tru9I	TTAA	3 cut(s)	201, 318, 334
TscAI	CASTG	3 cut(s)	24, 218, 226
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	3 cut(s)	24, 218, 226
XapI	RAATTY	2 cut(s)	165, 324
XbaI	TCTAGA	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	226
XspI	CTAG	3 cut(s)	69, 170, 330
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.