Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AUX_IAA | PF02309 | 16 - 196 | 7.2e-60 | AUX/IAA family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 334 |
| AclWI | GGATC | 4 cut(s) | 82, 162, 175, 463 |
| AcoI | YGGCCR | 2 cut(s) | 236, 273 |
| AcsI | RAATTY | 1 cut(s) | 413 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 57 |
| AjnI | CCWGG | 1 cut(s) | 301 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 147, 179 |
| AluBI | AGCT | 3 cut(s) | 15, 55, 575 |
| AluI | AGCT | 3 cut(s) | 15, 55, 575 |
| Alw26I | GTCTC | 1 cut(s) | 290 |
| AlwI | GGATC | 4 cut(s) | 82, 162, 175, 463 |
| AoxI | GGCC | 3 cut(s) | 236, 273, 424 |
| ApoI | RAATTY | 1 cut(s) | 413 |
| AsuC2I | CCSGG | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 1 cut(s) | 503 |
| BaeGI | GKGCMC | 1 cut(s) | 337 |
| BalI | TGGCCA | 2 cut(s) | 238, 275 |
| BamHI | GGATCC | 1 cut(s) | 167 |
| BanI | GGYRCC | 1 cut(s) | 334 |
| BbvCI | CCTCAGC | 1 cut(s) | 56 |
| BccI | CCATC | 2 cut(s) | 323, 482 |
| BciT130I | CCWGG | 1 cut(s) | 303 |
| BcnI | CCSGG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 1 cut(s) | 290 |
| BfaI | CTAG | 3 cut(s) | 398, 503, 576 |
| BglII | AGATCT | 2 cut(s) | 248, 382 |
| Bme1390I | CCNGG | 2 cut(s) | 72, 303 |
| BmiI | GGNNCC | 3 cut(s) | 108, 169, 336 |
| BmrFI | CCNGG | 2 cut(s) | 72, 303 |
| BmrI | ACTGGG | 1 cut(s) | 105 |
| BmsI | GCATC | 3 cut(s) | 70, 178, 489 |
| BmuI | ACTGGG | 1 cut(s) | 105 |
| Bpu10I | CCTNAGC | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 26 |
| BpuMI | CCSGG | 1 cut(s) | 72 |
| BsaBI | GATNNNNATC | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 3 cut(s) | 171, 302, 518 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 193, 223 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 57 |
| Bse118I | RCCGGY | 1 cut(s) | 103 |
| Bse1I | ACTGG | 3 cut(s) | 111, 242, 500 |
| Bse3DI | GCAATG | 1 cut(s) | 137 |
| Bse8I | GATNNNNATC | 1 cut(s) | 24 |
| BseBI | CCWGG | 1 cut(s) | 303 |
| BseDI | CCNNGG | 3 cut(s) | 171, 302, 518 |
| BseGI | GGATG | 3 cut(s) | 334, 504, 536 |
| BseJI | GATNNNNATC | 1 cut(s) | 24 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BseMI | GCAATG | 1 cut(s) | 137 |
| BseMII | CTCAG | 5 cut(s) | 47, 135, 285, 358, 447 |
| BseNI | ACTGG | 3 cut(s) | 111, 242, 500 |
| BseRI | GAGGAG | 1 cut(s) | 198 |
| BseSI | GKGCMC | 1 cut(s) | 337 |
| BshFI | GGCC | 3 cut(s) | 238, 275, 426 |
| BshNI | GGYRCC | 1 cut(s) | 334 |
| BsiSI | CCGG | 2 cut(s) | 71, 104 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BsmAI | GTCTC | 1 cut(s) | 290 |
| BsnI | GGCC | 3 cut(s) | 238, 275, 426 |
| Bsp1286I | GDGCHC | 1 cut(s) | 337 |
| Bsp143I | GATC | 8 cut(s) | 25, 74, 91, 167, 248, 355, 382, 455 |
| Bsp19I | CCATGG | 1 cut(s) | 518 |
| BspANI | GGCC | 3 cut(s) | 238, 275, 426 |
| BspCNI | CTCAG | 5 cut(s) | 48, 136, 286, 357, 446 |
| BspHI | TCATGA | 1 cut(s) | 558 |
| BspLI | GGNNCC | 3 cut(s) | 108, 169, 336 |
| BspPI | GGATC | 4 cut(s) | 82, 162, 175, 463 |
| BspT107I | GGYRCC | 1 cut(s) | 334 |
| BsrDI | GCAATG | 1 cut(s) | 137 |
| BsrFI | RCCGGY | 1 cut(s) | 103 |
| BsrI | ACTGG | 3 cut(s) | 111, 242, 500 |
| BssAI | RCCGGY | 1 cut(s) | 103 |
| BssECI | CCNNGG | 3 cut(s) | 171, 302, 518 |
| BssMI | GATC | 8 cut(s) | 25, 74, 91, 167, 248, 355, 382, 455 |
| BssT1I | CCWWGG | 2 cut(s) | 171, 518 |
| Bst2UI | CCWGG | 1 cut(s) | 303 |
| Bst6I | CTCTTC | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 1 cut(s) | 85 |
| BstDEI | CTNAG | 5 cut(s) | 56, 144, 294, 344, 433 |
| BstDSI | CCRYGG | 1 cut(s) | 518 |
| BstEII | GGTNACC | 1 cut(s) | 374 |
| BstF5I | GGATG | 3 cut(s) | 334, 504, 536 |
| BstKTI | GATC | 8 cut(s) | 28, 77, 94, 170, 251, 358, 385, 458 |
| BstMAI | GTCTC | 1 cut(s) | 290 |
| BstMBI | GATC | 8 cut(s) | 25, 74, 91, 167, 248, 355, 382, 455 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 212 |
| BstNI | CCWGG | 1 cut(s) | 303 |
| BstPI | GGTNACC | 1 cut(s) | 374 |
| BstSCI | CCNGG | 2 cut(s) | 70, 301 |
| BstSLI | GKGCMC | 1 cut(s) | 337 |
| BstX2I | RGATCY | 3 cut(s) | 167, 248, 382 |
| BstYI | RGATCY | 3 cut(s) | 167, 248, 382 |
| BsuRI | GGCC | 3 cut(s) | 238, 275, 426 |
| BtgI | CCRYGG | 1 cut(s) | 518 |
| BtsCI | GGATG | 3 cut(s) | 334, 504, 536 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 180 |
| Cac8I | GCNNGC | 1 cut(s) | 85 |
| CciI | TCATGA | 1 cut(s) | 558 |
| Cfr10I | RCCGGY | 1 cut(s) | 103 |
| CviAII | CATG | 5 cut(s) | 325, 406, 519, 532, 559 |
| DdeI | CTNAG | 5 cut(s) | 56, 144, 294, 344, 433 |
| DpnI | GATC | 8 cut(s) | 27, 76, 93, 169, 250, 357, 384, 457 |
| DpnII | GATC | 8 cut(s) | 25, 74, 91, 167, 248, 355, 382, 455 |
| DraI | TTTAAA | 2 cut(s) | 123, 412 |
| EaeI | YGGCCR | 2 cut(s) | 236, 273 |
| Eam1104I | CTCTTC | 1 cut(s) | 125 |
| EarI | CTCTTC | 1 cut(s) | 125 |
| Eco130I | CCWWGG | 2 cut(s) | 171, 518 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| Eco91I | GGTNACC | 1 cut(s) | 374 |
| EcoO65I | GGTNACC | 1 cut(s) | 374 |
| EcoRII | CCWGG | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 2 cut(s) | 171, 518 |
| ErhI | CCWWGG | 2 cut(s) | 171, 518 |
| FaeI | CATG | 5 cut(s) | 328, 409, 522, 535, 562 |
| FaiI | YATR | 9 cut(s) | 18, 312, 326, 407, 465, 520, 533, 560, 598 |
| FatI | CATG | 5 cut(s) | 324, 405, 518, 531, 558 |
| FokI | GGATG | 3 cut(s) | 341, 511, 523 |
| FspBI | CTAG | 3 cut(s) | 398, 503, 576 |
| HaeIII | GGCC | 3 cut(s) | 238, 275, 426 |
| HapII | CCGG | 2 cut(s) | 71, 104 |
| Hin1II | CATG | 5 cut(s) | 328, 409, 522, 535, 562 |
| HinfI | GANTC | 2 cut(s) | 401, 555 |
| HpaII | CCGG | 2 cut(s) | 71, 104 |
| HphI | GGTGA | 1 cut(s) | 503 |
| Hpy166II | GTNNAC | 1 cut(s) | 367 |
| Hpy188I | TCNGA | 7 cut(s) | 79, 248, 347, 360, 436, 460, 571 |
| Hpy188III | TCNNGA | 2 cut(s) | 398, 559 |
| Hpy8I | GTNNAC | 1 cut(s) | 367 |
| HpyAV | CCTTC | 3 cut(s) | 278, 355, 437 |
| HpyCH4V | TGCA | 3 cut(s) | 83, 215, 467 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 212 |
| HpyF3I | CTNAG | 5 cut(s) | 56, 144, 294, 344, 433 |
| Hsp92II | CATG | 5 cut(s) | 328, 409, 522, 535, 562 |
| Kzo9I | GATC | 8 cut(s) | 25, 74, 91, 167, 248, 355, 382, 455 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| LweI | GCATC | 3 cut(s) | 70, 178, 489 |
| MaeI | CTAG | 3 cut(s) | 398, 503, 576 |
| MaeIII | GTNAC | 2 cut(s) | 374, 491 |
| MalI | GATC | 8 cut(s) | 27, 76, 93, 169, 250, 357, 384, 457 |
| MboI | GATC | 8 cut(s) | 25, 74, 91, 167, 248, 355, 382, 455 |
| MboII | GAAGA | 4 cut(s) | 101, 142, 167, 271 |
| MflI | RGATCY | 3 cut(s) | 167, 248, 382 |
| MhlI | GDGCHC | 1 cut(s) | 337 |
| MlsI | TGGCCA | 2 cut(s) | 238, 275 |
| MluCI | AATT | 1 cut(s) | 413 |
| MluNI | TGGCCA | 2 cut(s) | 238, 275 |
| MmeI | TCCRAC | 1 cut(s) | 487 |
| MnlI | CCTC | 9 cut(s) | 44, 50, 51, 219, 283, 353, 432, 472, 572 |
| Mox20I | TGGCCA | 2 cut(s) | 238, 275 |
| MscI | TGGCCA | 2 cut(s) | 238, 275 |
| MseI | TTAA | 3 cut(s) | 30, 122, 411 |
| Msp20I | TGGCCA | 2 cut(s) | 238, 275 |
| MspI | CCGG | 2 cut(s) | 71, 104 |
| MspR9I | CCNGG | 2 cut(s) | 72, 303 |
| MvaI | CCWGG | 1 cut(s) | 303 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 212 |
| NciI | CCSGG | 1 cut(s) | 72 |
| NcoI | CCATGG | 1 cut(s) | 518 |
| NdeII | GATC | 8 cut(s) | 25, 74, 91, 167, 248, 355, 382, 455 |
| NlaIII | CATG | 5 cut(s) | 328, 409, 522, 535, 562 |
| NlaIV | GGNNCC | 3 cut(s) | 108, 169, 336 |
| NmuCI | GTSAC | 1 cut(s) | 491 |
| PagI | TCATGA | 1 cut(s) | 558 |
| PfeI | GAWTC | 2 cut(s) | 401, 555 |
| Psp6I | CCWGG | 1 cut(s) | 301 |
| PspEI | GGTNACC | 1 cut(s) | 374 |
| PspGI | CCWGG | 1 cut(s) | 301 |
| PspN4I | GGNNCC | 3 cut(s) | 108, 169, 336 |
| PsuI | RGATCY | 3 cut(s) | 167, 248, 382 |
| SaqAI | TTAA | 3 cut(s) | 30, 122, 411 |
| Sau3AI | GATC | 8 cut(s) | 25, 74, 91, 167, 248, 355, 382, 455 |
| ScrFI | CCNGG | 2 cut(s) | 72, 303 |
| SduI | GDGCHC | 1 cut(s) | 337 |
| SfaNI | GCATC | 3 cut(s) | 70, 178, 489 |
| SmlI | CTYRAG | 1 cut(s) | 41 |
| SmoI | CTYRAG | 1 cut(s) | 41 |
| Sse9I | AATT | 1 cut(s) | 413 |
| SspMI | CTAG | 3 cut(s) | 398, 503, 576 |
| StyD4I | CCNGG | 2 cut(s) | 70, 301 |
| StyI | CCWWGG | 2 cut(s) | 171, 518 |
| TasI | AATT | 1 cut(s) | 413 |
| TfiI | GAWTC | 2 cut(s) | 401, 555 |
| Tru1I | TTAA | 3 cut(s) | 30, 122, 411 |
| Tru9I | TTAA | 3 cut(s) | 30, 122, 411 |
| TscAI | CASTG | 2 cut(s) | 105, 187 |
| TseFI | GTSAC | 1 cut(s) | 491 |
| Tsp45I | GTSAC | 1 cut(s) | 491 |
| TspDTI | ATGAA | 3 cut(s) | 406, 520, 575 |
| TspRI | CASTG | 2 cut(s) | 105, 187 |
| XapI | RAATTY | 1 cut(s) | 413 |
| XbaI | TCTAGA | 1 cut(s) | 397 |
| XspI | CTAG | 3 cut(s) | 398, 503, 576 |