Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

63655125 .. 63656770

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0462300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCAGAAAGCACATATTGATCCTTTCACACAAGGTATTTGCAAGCCATCTGCAGCTCAAGGGGTTCCGCTCGGAGGGATGGGAAGTGGCAGCATCTCAAGAGGTTTTAGAGGCGAGTTCAGGCAATGGCAAATCATTCCGGGTGCATGTGATGGTTCTCCTGACATGGCCAATCAATTCTCTAGGTACAAACCAAGACCCATGAGGGCTGAAAGAGGCAATGAGTTGCATAATGGGAAGTTGATTGTGCAGAATTGGGGATTTCGGAGTTGGCCTGATGGGATTCAGTCAATGGCTATCCCACTAAGAGTTAATGTTTATGTGAATGAAATACTCCAAAGCTTACCAACATTTAGGAATCTCAATCATTTGAACTTGGACCTCTATTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

9.62

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydr_116N	PF12215	21 - 68	4.8e-14	beta-glucosidase 2, glycosyl-hydrolase family 116 N-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	70
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	168
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	2 cut(s)	56, 342
AluI	AGCT	2 cut(s)	56, 342
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	168, 272
ApeKI	GCWGC	2 cut(s)	53, 90
AspS9I	GGNCC	1 cut(s)	379
AsuC2I	CCSGG	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	65, 102
BccI	CCATC	4 cut(s)	55, 73, 146, 272
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	54, 91
BlsI	GCNGC	2 cut(s)	55, 92
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	42, 82
BpuMI	CCSGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse3DI	GCAATG	2 cut(s)	131, 226
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	2 cut(s)	131, 226
BseXI	GCAGC	2 cut(s)	65, 102
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	170, 274
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	2 cut(s)	170, 274
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	170, 274
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	131, 226
BssMI	GATC	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	65, 102
BsuRI	GGCC	2 cut(s)	170, 274
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	147, 166, 202
CviJI	RGCY	7 cut(s)	46, 56, 170, 209, 274, 296, 342
CviKI_1	RGCY	7 cut(s)	46, 56, 170, 209, 274, 296, 342
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	379
FaeI	CATG	3 cut(s)	150, 169, 205
FaiI	YATR	7 cut(s)	15, 148, 167, 203, 231, 321, 391
FatI	CATG	3 cut(s)	146, 165, 201
Fnu4HI	GCNGC	2 cut(s)	54, 91
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	54, 91
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	54, 91
HaeIII	GGCC	2 cut(s)	170, 274
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	3 cut(s)	150, 169, 205
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	2 cut(s)	283, 358
HpaII	CCGG	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	74, 267
Hpy188III	TCNNGA	2 cut(s)	99, 161
HpyCH4V	TGCA	6 cut(s)	4, 42, 53, 146, 229, 250
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	150, 169, 205
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	4 cut(s)	106, 153, 174, 288
Lsp1109I	GCAGC	2 cut(s)	65, 102
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	183
MalI	GATC	1 cut(s)	21
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	2 cut(s)	176, 253
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	6 cut(s)	68, 95, 104, 198, 209, 392
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	141
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	3 cut(s)	150, 169, 205
NlaIV	GGNNCC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	283, 358
PkrI	GCNGC	2 cut(s)	55, 92
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	54, 91
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	6 cut(s)	37, 58, 106, 188, 344, 384
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	379
SmlI	CTYRAG	2 cut(s)	57, 97
SmoI	CTYRAG	2 cut(s)	57, 97
Sse9I	AATT	2 cut(s)	176, 253
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	139
TasI	AATT	2 cut(s)	176, 253
TfiI	GAWTC	2 cut(s)	283, 358
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	2 cut(s)	53, 90
TspDTI	ATGAA	2 cut(s)	342, 378
VpaK11BI	GGWCC	1 cut(s)	379
XceI	RCATGY	1 cut(s)	150
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.